BAC Information

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BAC

Clone NameMSMg01-296J02
Chromosome1 (Build37)
Map Location 192,118,811 - 192,119,053
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnk2, LOC100039307, Cenpf, Ptpn14, LOC100042438, Smyd2, Prox1
Downstream geneLOC100039394, EG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296J02.T7 (MSMg01no296_j02.b1)MSMg01-296J02.TJ (MSMg01no296_j02.g1)
ACCAG424144AG424145
length763739
length of high quality
(start - end)
289 (131 - 419)243 (57 - 299)
definitionCHROMAT_FILE: MSMg01no296_j02.b1 PHD_FILE: MSMg01no296_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:47 2005CHROMAT_FILE: MSMg01no296_j02.g1 PHD_FILE: MSMg01no296_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGGATCCGCG
GAATTCACCAAGTGTGTTCCCGAGAACTGACCATCACGCCCCAGGGGTCC
ACCCCTCTCCATTTCCCCAGCCCTAACACTGTAAGTGTGCCACCACAGCT
GGCATTTTAAAAATCAGACTTAGTTATTTTATATATGGATGTTTGCTTGC
ATGTGTGTGTGCACTGTGGGCACAAAGGCACCTATGGGGTTCAGAAAAGA
GTGTCAAGTCCCTGGAACTGGAGTTATGGATGGTTTTAAGCTGCTGTACG
GGTGCTGGGAACCAAACCCCAGGTCCTCTTCAAGAACAGCGAGTACTCTA
ACCTCTGAGCTATCATCTCTTTCCTATTTATTTATTTATTTATTTGTTTT
GTTTTTTGTTTGTTTGTTTGCTTCTGTTTTAAAACATGAACTTTTGAGGC
TCATCCTTGGGCCTCCATGCTGTAAGAGCAGAGCTTTTATCGAAGGGGCC
GTCTCCTCCACCTTTCATTTAACCTTAACTACCTCCAATTCCAGTGCCAT
TGCTGGAATTCATTCCCACGAGGTTGTGTGCCCGTGAGCCTCCTCTTTCT
GTGGGGCACCAGCACTTCTAACTTTGCCCAGACTTCCCGAAGAGCTGAAG
CTCTAGCCTTTTAACATAACCAGTATTGCCATAATGGTTGGCCCTGGCTT
TTACTGGCTTCTTAAAGCCTAGAAGGATGCCTCCCCGCCCCACCTTGTTA
ACATTTTTGTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCCCCAGCCATAGATTTTTATAGTTAAACACATGTTTTGGTCCTA
AGCATAACCTCTCCTGTCAAGACCAGTGGTGTGAACTGGATCCAGAGTGG
ATGCCGGGGATGGGATCTCAGCTGCAAATGACCTAATGTGGCCCTGACCT
GACTGCTCAGGCAGAATGAACACCTGCACACCCCCAAGTCTTTACCACCT
TTCAGGCTGGGAGCACACTGACTACGGTGTTTGTTCATTTGAGCCACACA
AGGAAGGTAATGTTAGGGCCTTGGAAAATTCATGTGGATGCACATGTTTT
ATCTCACCCGACCTACCCCCTCTTAAAACACGGCCGCCTGGGCTTTTCTT
GCCCCCAGTTGAAAAAAATAATTTCCGTCTTTGAGTCGGTGCTCATAATT
GGCCTGCTTGTTATCCGAGTTGGGGAGAAAATTATGCTAATGACGTCATG
TTTTCAAGGCCCACGTGGCTCACTTACTTTTCTCCTGCTCCTTGTCCAAC
ACTCCGTATCCTTCATGACTGCTCCAGTTCTGCTGATGACACCACGTAAT
TGTGAAATTCTGTGTTGCTTCTTTCATTCTACGCCCGCCCCTCCTGTTTA
AGAAAACAAGACCCTGTATTATACCTGTTTTCTTTTCGGCCTTAGTACTA
TTCCTCCTCCTCTCCTGGAATTCATCTTCTCGTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_j02.g1 MSMg01no296_j02.g1 CHROMAT_FILE:
MSMg01no296_j02.g1 PHD_FILE: MSMg01no296_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:47 2005
         (243 letters)



>mm_chr1_192118611_192119253
          Length = 643

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccccagccatagatttttatagttaaacacatgttttggtcctaagcataacctctcctg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ccccagccatagatttttatagttaaacacatgttttggtcctaagcagaacctctcctg 260

                                                                       
Query: 61  tcaagaccagtggtgtgaactggatccagagtggatgccggggatgggatctcagctgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaagaccagtggtgtgaactggatccagagtggatgccggggatgggatctcagctgca 320

                                                                       
Query: 121 aatgacctaatgtggccctgacctgactgctcaggcagaatgaacacctgcacaccccca 180
           ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 aatgacctaatgtagccctgacctgacagctcaggcagaatgaacacctgcacaccccca 380

                                                                       
Query: 181 agtctttaccacctttcaggctgggagcacactgactacggtgtttgttcatttgagcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtctttaccacctttcaggctgggagcacactgactacggtgtttgttcatttgagcca 440

              
Query: 241 cac 243
           |||
Sbjct: 441 cac 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)