BAC Information

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BAC

Clone NameMSMg01-296J14
Chromosome1 (Build37)
Map Location 55,557,036 - 55,557,316
singlet/doubletsinglet
Overlap genenone
Upstream geneD230012E17Rik, Ankrd44, Sf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009
Downstream gene9130227L01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296J14.T7 (MSMg01no296_j14.b1)MSMg01-296J14.TJ (MSMg01no296_j14.g1)
ACCAG424166AG424167
length737751
length of high quality
(start - end)
234 (116 - 349)283 (75 - 357)
definitionCHROMAT_FILE: MSMg01no296_j14.b1 PHD_FILE: MSMg01no296_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:50 2005CHROMAT_FILE: MSMg01no296_j14.g1 PHD_FILE: MSMg01no296_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTTC
CATTGGCCTACCTGTCTGTCCCTGTACCAGTACCATGCAGTCTTTAATCA
CAATTGCTCTATCCTACAGTATAGTATAGTACAGTACAGTACAGGTCAGG
CATGGTGATTCCACCAGAGGTTCTTTTATCATTGAGAAGAGTTTTTGGTA
TTCTAGGTTTTTTTGTTATTCCAGATGAATTTGCAAATTGCCCTTTCTAA
TTCGTTGAAGAATTGAGTTGGAGTTTTGATGGGGATTGCATTGAATCTGT
AGACTGCTTTCAGCAAGATAGCCATTTATACTATATTGATCCTGCCAATC
CTTGATCATGCCCGATCTTTCCATATTCTGAGATCTTCTTTGATTTCTTT
CTTCAGAGACTTAAAGTTCTTATCATACAGATCTTTCACTTCCTTAGTTA
GAGTCACACCAAGGTAATTTATATTATTTGTGACTGTTGTGAAGGGTGTT
TGTCTTAGTTAGGGCTTTCACTGCTGCGAACAGACACCATGACCAAGGCA
AGTCTTATAGAAAACAACATTTAATTGGTGCTGGCTTACAGGTTCAGAGG
TTCAGTCCATTATCATCAAGGTGAGAGCATTGCCGTATCCAGGCAGGCAT
GGTACAGGAGGAGCTGAGAGTTCTATGTCTTCCTCCATAGGCTGCTAGTG
GAAGACTGACTTCCCAGGCATTTTGGTGAGGATCTTA
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAAGTCTTTGAACTCAACAATTGTC
ATATCTGATAGCTTGGTGTCTATGTAAAAATAAATATAAGACTCTCCAAA
TCAGGATAGCTGGTATATAAATCTATTTATTAGATTTATAAGACTAGGGT
AATCTCAAAGGCAGCTTTATATAACAGTCTCAAGCTCAGAAGCTTCCAGG
AATCACTAATAGTTTAGGCTAGTCATGAAGTCACACTTTTTCTGGGGCAG
TATGAATGCCCAGCACAGCTGTCCCTCAATTCCAGCCAACTGTCCCTGTA
TCTTCCTATTTTTCAACAAGCCACACCCGCAGTTTCATATGTGAAATCTT
CCTATTAAAATGTTGGCACAAAAAGTATAAAAGCACTGCATGGGCCGAAT
AAAACATGTCTGTGGGCAGGATTCAGCCAGCTGGCTGCCAGTTTGAGATC
TGAGGAGAACTACAGAGAAAGGGAAGAGTCATATATTCCCTTGCTTTCCT
CCTCCAACTCGGGAATGAATTATCTTGGAGATGACTGTGAACATCTAGAC
ATGCAAGATTTTTTTTACATGGGGTGGAGCTTCATTTAAAGAGACACTAC
TTTCCTGTATTTCTTTTAAGGATGTTTACACACCCACTCTCTTTTCACCC
ATTCAGGATAAAAAATACCGGTTTGGAGGGGCTTCTCATTTAAAGATTTA
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_j14.g1 MSMg01no296_j14.g1 CHROMAT_FILE:
MSMg01no296_j14.g1 PHD_FILE: MSMg01no296_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:50 2005
         (283 letters)



>mm_chr1_55556836_55557516
          Length = 681

 Score =  497 bits (257), Expect = e-145
 Identities = 276/283 (97%), Gaps = 2/283 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaagtctttgaactcaacaattgtcatatctgatagcttggtgtctatgtaaaaataaa 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaaattctttgaactcaacaattgtcatatctgatagcttggtgtctatgtaaaaataaa 422

                                                                       
Query: 61  tataagactctccaaatcaggatagctggtatataaatctatttattagatttataagac 120
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 421 tat--gactctccaaatcaggatagctggtatataaatctatttattagatttataaaac 364

                                                                       
Query: 121 tagggtaatctcaaaggcagctttatataacagtctcaagctcagaagcttccaggaatc 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tagggtaatctcaaagacagctttatataacagtctcaagctcagaagcttccaggaatc 304

                                                                       
Query: 181 actaatagtttaggctagtcatgaagtcacactttttctggggcagtatgaatgcccagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 actaatagtttaggctagtcatgaagtcacactttttctggggcagtatgaatgcccagc 244

                                                      
Query: 241 acagctgtccctcaattccagccaactgtccctgtatcttcct 283
           ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 243 acaactgcccctcaattccagccaactgtccctgtatcttcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 681
Length adjustment: 9
Effective length of query: 274
Effective length of database: 672
Effective search space:   184128
Effective search space used:   184128
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)