BAC Information

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BAC

Clone NameMSMg01-296N06
Chromosome1 (Build37)
Map Location 145,715,884 - 145,716,388
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545369, Cdc73, B3galt2, LOC623138, Glrx2, Trove2, Uchl5
Downstream geneRgs2, Rgs13, Rbm6-ps2, Rgs1, EG639456, Rgs21, Rgs18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296N06.T7 (MSMg01no296_n06.b1)MSMg01-296N06.TJ (MSMg01no296_n06.g1)
ACCAG424330AG424331
length774768
length of high quality
(start - end)
513 (70 - 582)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no296_n06.b1 PHD_FILE: MSMg01no296_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:07 2005CHROMAT_FILE: MSMg01no296_n06.g1 PHD_FILE: MSMg01no296_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTACAGTTACCCACTGAAGGATGAATGATGAAATATATAAAATG
ATAATAACAGGACAGTTCACCTACACCAACAGCAGGGAGAGCAGGGTGTG
TGGGCACAACACACACAAGAACAACAACAGAAGCAAGACAGGCTACATGT
GGAGTCATCTGCCATTTGCTTCTACATCATTACTCAAAAAAGCAGCACCA
GAGGCGTAGGTGAGTTTGAAAGAAAAGTGCACATTTAGGGAGAGAAGAAC
AATTAAGCTGTGTTGCCAGAAGTTCTGAAGGATAAACTAAAGTTGATGGT
AAGGAGTTTCAAGGGAGGTGAATCAATGTGTTTGTGTGCATTTCTTTTTC
TTTTTCTTTCTTTGGCTCCCCCAAGACAGGGTTTCTCTGTGAAGCCCTAG
ATGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCTAACTCAGAAATC
CGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACA
GCCCAGCTTTGTGTGCATTTCTTAACAAGATAGGTAGTTGGGTACATAGA
TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATTGAGA
TATTTCTCTCCTTTTTCTTTCTCCTCCCTCTTTGTTCTTTCCTTTTTCTT
TTTTTTTATATTTTTATTTTCTCTTATTTTCTCTCCTCCTTCTCCCCTCC
CTCCCTTTTCCCCCTCCTCTCTCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTAAAAAAACAAGAAAGAAGCAA
GATTCTATGTAAACATAATATATTTTATAAAAATTATTTCTAAAATGTAT
CCAGAAAGTATTAAGACTAAAAAAAACCTGAAATTTTATTAAGTGTGCTT
AATATCTGGTTTACTAAATGATAGCTGAATTCTGATATTTACTTCTACAT
ATCTACTGTGTTATCATGTTTGTTCAAAGATATCAAGAAAATCTTGCCTC
AAACAGTAATGGTAGAAGCATTAAGATAACTTTTCAGATAGCTGATATTC
CTTTTTACTATCATATTTTTTTTTATGCCCCCCCCCCCCATACTGCAAGT
AGAAACTACATCCATAAATACCGTGCATTAATATAAAAAATTTTATCATT
CTATCTGCACTTTAAATGAAATTTTTCATTCACCCATTGATCCTCAGGAA
AATACCCATCTCTGGGTTATGCAGTTATACATACACTCCAGACTAACACA
TTGTATTATTCGACATTTAAAAATATGTCATTTGCTAATGCCTTTTTACA
ACATATTTATTTATTTTATGTATATGAGCACACTATATCTGTACAGATGG
TTGTGAACGTTCACGTGCCTGTTAGGAATTGAATTTACGACCTCTGCTTA
CTCCAGTCGGGTCATCCGCCTCCAGAGAACGTTGTCAGATCTCATTACGG
CGGTTGTCGATCTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_n06.b1 MSMg01no296_n06.b1 CHROMAT_FILE:
MSMg01no296_n06.b1 PHD_FILE: MSMg01no296_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:07 2005
         (513 letters)



>mm_chr1_145715751_145716664
          Length = 914

 Score =  868 bits (449), Expect = 0.0
 Identities = 491/509 (96%), Gaps = 9/509 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaaggatgaatgatgaaatatataaaatgataataacaggacagttcacctacaccaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 638 ctgaaggatgaatgatgaaatatataaaatgataataacaggacagttcacctagagcaa 579

                                                                       
Query: 61  cagcagggagagcagggtgtgtgggcacaacacacacaagaacaacaacagaagcaagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cagcagggagagcagggtgtgtgggcacaacacacacaagaacaacaacagaagcaagac 519

                                                                       
Query: 121 aggctacatgtggagtcatctgccatttgcttctacatcattactc-aaaaaagcagcac 179
           ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 518 aggctacatgtggagtcatctgccatttgcttctacatcatcactcaaaaaaagcagcac 459

                                                                       
Query: 180 cagaggcgtaggtgagtttgaaagaaaagtgcacatttagggagagaagaacaattaagc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cagaggcgtaggtgagtttgaaagaaaagtgcacatttagggagagaagaacaattaagc 399

                                                                       
Query: 240 tgtgttgccagaagttctgaaggataaactaaagttgatggtaaggagtttcaagggagg 299
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tgcgttgccagaagttctgaaggataaactaaagttgatggtaaggagtttcaagggagg 339

                                                                       
Query: 300 tgaatcaatgtgtttgtgtgcatttctttttctttttctttctttggct----cccccaa 355
           ||||||||||| ||||||||| |||||||||||||||||||||||||||    |    ||
Sbjct: 338 tgaatcaatgtatttgtgtgcttttctttttctttttctttctttggctttttc----aa 283

                                                                       
Query: 356 gacagggtttctctgtgaagccctagatgtcctggaactcactctgtagaccaggctggc 415
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gacagggtttctctgtgtagccctagatgtcctggaactcactctgtagaccaggctggc 223

                                                                       
Query: 416 ctctaactcagaaatccgcctgcctctgcctcccaagtgctgggattaaaggcgtgcacc 475
           ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ctcgaactcagtaatccgcctgcctctgcctcccaagtgctgggattaaaggcgtgcacc 163

                                        
Query: 476 accacagcccagctttgtgtgcatttctt 504
           |||||||||||||||||||||||||||||
Sbjct: 162 accacagcccagctttgtgtgcatttctt 134


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 914
Length adjustment: 10
Effective length of query: 503
Effective length of database: 904
Effective search space:   454712
Effective search space used:   454712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)