Query= MSMg01no296_o16.b1 MSMg01no296_o16.b1 CHROMAT_FILE:
MSMg01no296_o16.b1 PHD_FILE: MSMg01no296_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:14 2005
(226 letters)
>mm_chr1_137597306_137597931
Length = 626
Score = 406 bits (210), Expect = e-118
Identities = 222/226 (98%)
Strand = Plus / Plus
Query: 1 tctctcttttgtgttatgctgagcatggaacccaaggcctcgaacataagtgcacactct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctcttttgtgttatgctgagcatggaacccaaggcctcgaacataagtgcacactct 260
Query: 61 accatcaaattacatcactagcctccagttctcaatttgacatctgcagcatttgatgtt 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accatcaaactacatcactagcctccagttctcaatttgacatctgcagcatttgatgtt 320
Query: 121 tggtacgcacttacgcttacttgtataaaattattatgaaacattttagatatataagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtacgcacttacgcttacttgtataaaattattatgaaacattttagatatataagat 380
Query: 181 gtataatttataatacaacaaggaattgttccggtagtacccttta 226
|||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtataaaaaataatacaacaaggaattgttccggtagtacccttta 426
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space: 133889
Effective search space used: 133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no296_o16.g1 MSMg01no296_o16.g1 CHROMAT_FILE:
MSMg01no296_o16.g1 PHD_FILE: MSMg01no296_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:14 2005
(681 letters)
>mm_chr1_137765377_137766456
Length = 1080
Score = 1270 bits (657), Expect = 0.0
Identities = 675/681 (99%), Gaps = 1/681 (0%)
Strand = Plus / Minus
Query: 1 agtgttatactggatgtgggtgcagaagtgccaaatgaccacaaaagtcctccttcagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 agtgttatactggatgtgggtgcagaagtgccaaatgaccacaaaagtcctccttcagct 821
Query: 61 gcccttagctaagggagtggcaggtcctgtaggggacagcctgatgagcatgagaggacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gcccttagctaagggagtggcaggtcctgtaggggacagcctgatgagcatgagaggacc 761
Query: 121 tcgggtccaggattggatagaaaagaacaaaaaaagacaggaaggacacagaacatctag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 tcgggtccaggattggatagaaaagaacaaaaaaagacaggaaggacacagaacatctag 701
Query: 181 aaggtgggaaggaaaaggcttcaaagacccagaggccaagtgtcacagagcccatgtcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 aaggtgggaaggaaaaggcttcaaagacccagaggccaagtgtcacagagcccatgtcca 641
Query: 241 cataggtccacatgcctgaccttgaagccacttccgcttgttcctcttgcaacttacctg 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 640 cataggtccacatgcctgaccttgaagccacttctgcttgttcctcttgcaacttacctg 581
Query: 301 gggtggggctagaacctccaccaccaccaggtttcagagagctaacccatccatctctaa 360
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 580 gggtggggctagaacctccaccaccaccaggtttcagagagctaaagcatccgtctctaa 521
Query: 361 aggggcagtgccttctgctgacagatattgggcaacagtcttcctctttgaagagccaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aggggcagtgccttctgctgacagatattgggcaacagtcttcctctttgaagagccaca 461
Query: 421 caatgaccctttctctttcagatccttggggcattgttttctatttggatctgcacttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 caatgaccctttctctttcagatccttggggcattgttttctatttggatctgcacttca 401
Query: 481 ccttagtaacccaggcagagctcagagcatcacattccagtcaatagctggaaaagaaaa 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 400 ccttagtaacccaggcagagctcagagcatcacattccagtcaatagctggaaaag-aaa 342
Query: 541 aaactgagagaaagtgaccagctccgtcacctaggaagtttacagaagaaccaagcctgg 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 341 aaactgagagaaagtgaccagctctgtcacctaggaagtttacagaagaaccaagcctgg 282
Query: 601 gccagacccaggcctccccagtcctgatatcagaacatgataaggaagactatggaagag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gccagacccaggcctccccagtcctgatatcagaacatgataaggaagactatggaagag 222
Query: 661 gcaattgtactgctcactgtc 681
|||||||||||||||||||||
Sbjct: 221 gcaattgtactgctcactgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1080
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1070
Effective search space: 717970
Effective search space used: 717970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
