BAC Information

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BAC

Clone NameMSMg01-296P07
Chromosome1 (Build37)
Map Location 13,000,687 - 13,204,972
singlet/doubletdoublet
Overlap geneLOC383490, Prdm14, Ncoa2
Upstream geneLOC665262, LOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1
Downstream geneLOC665341, LOC100039812, EG621685, Tram1, Lactb2, Xkr9, LOC100039843, EG433273, LOC100039859, LOC100039869, Eya1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296P07.T7 (MSMg01no296_p07.b1)MSMg01-296P07.TJ (MSMg01no296_p07.g1)
ACCAG424426AG424427
length739732
length of high quality
(start - end)
264 (85 - 348)285 (73 - 357)
definitionCHROMAT_FILE: MSMg01no296_p07.b1 PHD_FILE: MSMg01no296_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:17 2005CHROMAT_FILE: MSMg01no296_p07.g1 PHD_FILE: MSMg01no296_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,204,710 - 13,204,972)(13,000,687 - 13,000,969)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTGACTACCTGTCCTTTATTCATCTTCATCAAAAGGCAAAAGTCAG
CTGCCACCATGGAGGTGAGAGGCCATCCTGGCAGAGTGCTTCCTCTGTCC
TAAGTTTTGCTCTGCTGTCTTCATATCCTTTGATCTGTACAATGCCCCTG
TAGAGTAAGTCTGCTTATTCTCTCAGTTTTACAGGGGAAGGCCTTGGGTT
AGGGCTGGCTGCTCTAAAGCTACAAGGCCTCAGATCTAAATCTCTACTTC
GTTCCCACGCCTGTGTGTTCATGGAGCCTGTCATCCAGCCTGCCCTGACG
GTTTTGTTTTTTTTTTGCCACCCCACCCCCTCTGAACAAATTGGCTTAAG
TGTGGACTCAGCTGCCCCCCAAGATACTTAAAGTACCGAGAGGAATATTT
CTTACAGAGCTCTGTTTTAAAGGATAGTATGCATGTTCAATGCACGTCAT
GTTTTTCAGTAACACACATACACACACACACACACACTCACTCTCACATA
CATACACTCTCTCTTTAGAATAATAAATCTCCTTTGAATGAATGTGATAC
GTGTTTATTGATAACAAAATAACATACAACAACTTGGTATTTATTCTACA
GTATTGACATTCCAAGCTTGTTCTTGAGTATTTGTTTTTTTCACTGTCAC
TTTTTAACCAATACTCTTTCTGACACTCTTTTTCACTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAGATAACTCTTCCTCGGAGGCCAGGC
CTCGCTTTATGCTCCCTAGTGCAGGGTTTCTGGTGAAATTTATTTCCTTG
AAGTTTCAGGGTCCCTACTGCAATCCCCTGAGTCTTGCTCATCCCTGAAA
TCAAGTGTTTGCAGAAATACTATGGCTTTTATGGAAATGTGGGAAATCCT
AAAGATGTGTCTGGACCTGAAGAATGTCCTGAGTAGACTGCAGACAGGAG
CCCCGGTGGAAGACACTCTCTTAATGTCTGGCAGCCTGAGGTCCTTCCCC
CTCAGTTTTTTTTATTTCCCTTACCTTCAAAATCAAAGGCTGGTGAGGTG
AACGCCTCCAGCTACACTGACAGATAAATCCCTTGTCTCCGAACAATTCT
GTCTAAAGATGGCACCGATTAACTAACCCCCAGTTCAGCGTTTAACTGTT
CTCCATCCCAGAATGACAAGACGCGTTTTCCTGGTTGATCCAATCCTACA
GTAGGAGGGAAATGGCAGGCAGGCAGGCGGTACTAAAGTCCCTTTCCTTG
GTCAGTTAAACAATTGAGAAGTCTAGAAAGAAAGGCTGCGTTTACCTGGA
ATCTATTACATTTTTAAAGACTAGTGTGAGTCTCGGTGGGAAGGATTCTG
TTCTCTCTGCACTGGCCTGGGTCCCTTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_p07.b1 MSMg01no296_p07.b1 CHROMAT_FILE:
MSMg01no296_p07.b1 PHD_FILE: MSMg01no296_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:17 2005
         (264 letters)



>mm_chr1_13204510_13205173
          Length = 664

 Score =  501 bits (259), Expect = e-146
 Identities = 262/263 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaggcaaaagtcagctgccaccatggaggtgagaggccatcctggcagagtgcttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aaaaggcaaaagtcagctgccaccatggaggtgagaggccatcctggcagagtgcttcct 404

                                                                       
Query: 61  ctgtcctaagttttgctctgctgtcttcatatcctttgatctgtacaatgcccctgtaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctgtcctaagttttgctctgctgtcttcatatcctttgatctgtacaatgcccctgtaga 344

                                                                       
Query: 121 gtaagtctgcttattctctcagttttacaggggaaggccttgggttagggctggctgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gtaagtctgcttattctctcagttttacaggggaaggccttgggttagggctggctgctc 284

                                                                       
Query: 181 taaagctacaaggcctcagatctaaatctctacttcgttcccacgcctgtgtgttcatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 283 taaagctacaaggcctcagatctaaatctctacttcgttcccacgcctgtgtgttcaggg 224

                                  
Query: 241 agcctgtcatccagcctgccctg 263
           |||||||||||||||||||||||
Sbjct: 223 agcctgtcatccagcctgccctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no296_p07.g1 MSMg01no296_p07.g1 CHROMAT_FILE:
MSMg01no296_p07.g1 PHD_FILE: MSMg01no296_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:17 2005
         (285 letters)



>mm_chr1_13000487_13001171
          Length = 685

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagataactcttcctcggaggccaggcctcgctttatgctccctagtgcagggtttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagataactcttcctcggaggccaggcctcgctttatgctccctagtgcagggtttctg 260

                                                                       
Query: 61  gtgaaatttatttccttgaagtttcagggtccctactgcaatcccctgagtcttgctcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgaaatttatttccttgaagtttcagggtccctactgcaatcccctgagtcttgctcat 320

                                                                       
Query: 121 ccctgaaatcaagtgtttgcagaaatactatggcttttatggaaatgtgggaaatcctaa 180
           |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 321 ccctgaaatcaagtgtttgcagaaatactacggcttttatggaaatgtgtgaaatcctaa 380

                                                                       
Query: 181 agatgtgtctggacctgaagaatgtcctgagtagactgcagacaggagccccggtggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatgtgtctggacctgaagaatgtcctgagtagactgcagacaggagccccggtggaag 440

                                                      
Query: 241 acactctcttaatgtctggcagcctgaggtccttccccctcag 283
           |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 acactctcttaatgtcaggcagcctgaggtccttccccctcag 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)