Query= MSMg01no297_a12.b1 MSMg01no297_a12.b1 CHROMAT_FILE:
MSMg01no297_a12.b1 PHD_FILE: MSMg01no297_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:22 2005
(661 letters)
>mm_chr1_194262771_194263832
Length = 1062
Score = 1241 bits (642), Expect = 0.0
Identities = 657/662 (99%), Gaps = 1/662 (0%)
Strand = Plus / Minus
Query: 1 tggcaacctctgctttagaaagccctggtgatgggtatcagctccctcccaaacacacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tggcaacctctgctttagaaagccctggtgatgggtatcagctccctcccaaacacacca 663
Query: 61 ggttgagccttaattacgatttttaaaaaatccctcctggaataaattatcataagcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ggttgagccttaattacgatttttaaaaaatccctcctggaataaattatcataagcaaa 603
Query: 121 cactgcag-aaaaaatactcgcacacacaataatattggctttgaaaagaaagccctaca 179
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 cactgcagaaaaaaatactcgcacacacaataatattggctttgaaaagaaagccctaca 543
Query: 180 cttggaggatgaaaagcgcccatccaattacctgtgtgccaattatccctggcactggct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 cttggaggatgaaaagcgcccatccaattacctgtgtgccaattatccctggcactggct 483
Query: 240 gctggtaattacctaattgcttgtatgctggcatccttgagttgtggtacatttgatcta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gctggtaattacctaattgcttgtatgctggcatccttgagttgtggtacatttgatcta 423
Query: 300 ctgtcttaatgatcaatccctgagcaccaaggggtgacacctcttccccatccacgggga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ctgtcttaatgatcaatccctgagcaccaaggggtgacacctcttccccatccacgggga 363
Query: 360 catggagcccacacaagtcattaaccaaagaagcagacctgctcctaacacaagaggacc 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 362 catggagcccacacaagtcattaaccaaagaagcagacctgctcctaacacaaggggacc 303
Query: 420 aagagtgacttcaactcttcaagcctggaagtagagatgggggtgagacaaaatgtgcac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aagagtgacttcaactcttcaagcctggaagtagagatgggggtgagacaaaatgtgcac 243
Query: 480 agggtgctgcctgcagggccaggttatggttattgtattgggttttgagatatggtctca 539
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 242 agggtgctgcctgcagggccaggttacggttattgtattgggttttgagatatggtctca 183
Query: 540 ctaaatcgcccaggcttgcttcaaattgagtctatagcccagtttgtccttgaatttgca 599
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ctaaatcacccaggcttgcttcaaattgagtctatagcccagtttgtccttgaatttgca 123
Query: 600 atcttcatgcctctaccaactgctggaatttgaggcatgtgaccccatgcccagatttgc 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 122 atcttcatgcctctaccaactgctggaatttgaggcatgtgaccccatgcccagctttgc 63
Query: 660 ta 661
||
Sbjct: 62 ta 61
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1062
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1052
Effective search space: 684852
Effective search space used: 684852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_a12.g1 MSMg01no297_a12.g1 CHROMAT_FILE:
MSMg01no297_a12.g1 PHD_FILE: MSMg01no297_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:22 2005
(616 letters)
>mm_chr1_194092582_194093597
Length = 1016
Score = 1089 bits (563), Expect = 0.0
Identities = 606/625 (96%), Gaps = 10/625 (1%)
Strand = Plus / Plus
Query: 1 catgttatttctgcttttcacaatgtcatgatgatgttaagagttcacagcagagtgaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 catgttatttctgcttttcacaatgtcatgatgatgttaagagttcacagcagagtgaca 252
Query: 61 tacgcaagagcctaagtcggatgcttggatctgtctcaagcaatccttcatagctttctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tacgcaagagcctaagtcggatgcttggatctgtctcaagcaatccttcatagctttctc 312
Query: 121 cacaggcttgtaaagagaatgcaaagagaatgtttttgctcagcagttaagtgcttgcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cacaggcttgtaaagagaatgcaaagagaatgtttttgctcagcagttaagtgcttgcct 372
Query: 181 ttagtcagcagcctgtgttctagctgtgggagggagagatgggagccctggagcagggga 240
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 373 ttagtcagcagcccgtgttctagctgtgggagggagagatgggagccctggagccgggga 432
Query: 241 ctgcagagacttgttgaagctgtgagctctgctctgtcactgagagaccctgcctcagtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctgcagagacttgttgaagctgtgagctctgctctgtcactgagagaccctgcctcagtg 492
Query: 301 aatatggtataagggtaagcaaggttgattcctaaaatcaatttgtgtgggtctacacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aatatggtataagggtaagcaaggttgattcctaaaatcaatttgtgtgggtctacacaa 552
Query: 361 ctacattcatgtaccccaacacgtgtgacctacacacatgcaaaaacgtgcacacacatg 420
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 553 ctacattcatgtaccccaacacgtgtgacctacacacatgcgaaaatgtgcacacacatg 612
Query: 421 tgcaaatcataacatgaaacatgggcaaaaaaac--------ccaaaaacatcctagcat 472
||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 613 tgcaaatcataacatgaaacatgggcaaaaaaaaaaaaaaaacaaaaaacatcctagcat 672
Query: 473 ctaaatctacttctagaatgctggtttctgttgttaatgtgtaaaagctgaatctcagaa 532
||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct: 673 ctaaatctacttctagaatgctggtttctgtggctaacgtgtaaaagctgaatctcagaa 732
Query: 533 atgggaggaggaagctgcacacagttctccatggatcc-cccacttaccttggtgcctcc 591
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 733 atgggaggaggaagctgcacacagttctccatgga-cctcccacttaccttggtgcctcc 791
Query: 592 ctcagatcctcttgagtatagctgc 616
|||||||||||||||||||||||||
Sbjct: 792 ctcagatcctcttgagtatagctgc 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
