TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGG
AATTCAAGCATGAATTTCGAGCAGAAACTATGGAGGAGTGTTCTTTGATG
ACTCTTTCTGGCTCATGCTTAGCTAGCTTTCTTAACATAATATAGGCCTG
CCTTCCCAGGGAATGGTGGACAGTGTTGCCCTAAATCAACTAGTAGTCAA
GGTAGTCCTCCCCAAGCCCCCACATCTGGATCTGGACAATCCCTCAAATG
AGACTCTTCTTTCAGGTGACACTAAGCTATTTCAAGTTAATAGTTAAACC
TATCTAGGACAGAGACCTTTCTCTGCCTCTCAAGTGTCCTCTGTAGAGCT
TTGAATGTCACAATGAATAACTATTAAGGGAAAAACTCAGCTATAACACT
TCAGTGGTTAGAGGAAACGACTTGGAGTAGAAGGATGTCAGCAAAGGCCA
TGCTGTTGCTCTATGTATCCATCTTTAAAGCTTTTTCTGATTTCACATTG
AAGAGCCCAGCATTGGCTTTAACCCCATTCATGTTTTTCTTTGGATTCAT
AGTGCACTTAAAATTATGTTCTTTTTCCAAAACACTTTATTTAGGTGTGT
CTGTGTGCATGTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTTAAGNGTACATATACATGTGTGGAAGCTCACGAC
CAATCTTCAGTTTAATTCTTCAGGTCCCATCTACCTATTTTTGG

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTATCCCATTTT
TAATAGGGTTATTTGGTTCTCTGCAGTCTAACTTCTTGAGGTCTTTGTAT
ATATTGGATATTAGCCCTCTATTGGATGTAGGATTGGTAAAGATCTTTTC
CCAATCTGTAGGTTGTCGTTTTGTACTGATGACAGTGTCTTTTGCCTTGC
TGAAGCTTTTCAATTTGATGAGCTCCCATTTCTCTGTAGATGATCTTAGA
GCCTGAGCCATTGGTGTTCTTTTCACGAACTTTTCCCCTGTGCCGAAGTG
TTCAAGGTTCCTTCCCAATTTCTCATCTAATAGATTCACTGTATCTGGTT
TTATGTGGAGGTCTTTGATCCACTTGAACTTGAGCTTTGTACAAGAAGAT
ACAAATTTGCACACTTCTACATGCTGATGGCCAGTTAGGCCAATGCCACT
TATTGAATATGCTGGGTTTTTTTCCCACTGCATGGTTTTAGCTTTTTTGT
CGAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATT
CTATCTCATTGATCTTCTTCTATGTCTCTGTACCAATACCACTTGGGGTT
TGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTAACTATTGCTCTGTAGTAG
ACCTTGAGGTCAGGAAGGGTGATTCCCCCAGAAGTTTTCTT

Query= MSMg01no297_b04.b1 MSMg01no297_b04.b1 CHROMAT_FILE:
MSMg01no297_b04.b1 PHD_FILE: MSMg01no297_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:26 2005
         (623 letters)



>mm_chr1_123872706_123873728
          Length = 1023

 Score = 1139 bits (589), Expect = 0.0
 Identities = 598/603 (99%), Gaps = 4/603 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaagcatgaatttcgagcagaaactatggaggagtgttctttgatgactctttc 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaagcatgaatttggagcagaaactatggaggagtgttctttgatgactctttc 263

                                                                       
Query: 64  tggctcatgcttagctagctttcttaacataatataggcctgccttcccagggaatggtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggctcatgcttagctagctttcttaacataatataggcctgccttcccagggaatggtg 323

                                                                       
Query: 124 gacagtgttgccctaaatcaactagtagtcaaggtagtcctccccaagcccccacatctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gacagtgttgccctaaatcaactagtagtcaaggtagtcctccccaagcccccacatctg 383

                                                                       
Query: 184 gatctggacaatccctcaaatgagactcttctttcaggtgacactaagctatttcaagtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gatctggacaatccctcaaatgagactcttctttcaggtgacactaagctatttcaagtt 443

                                                                       
Query: 244 aatagttaaacctatctaggacagagacctttctctgcctctcaagtgtcctctgtagag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatagttaaacctatctaggacagagacctttctctgcctctcaagtgtcctctgtagag 503

                                                                       
Query: 304 ctttgaatgtcacaatgaataactattaagggaaaaactcagctataacacttcagtggt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctttgaatgtcacaatgaataactattaagggaaaaactcagctataacacttcagtggt 563

                                                                       
Query: 364 tagaggaaacgacttggagtagaaggatgtcagcaaaggccatgctgttgctctatgtat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tagaggaaacgacttggagtagaaggatgtcagcaaaggccatgctgttgctctatgtat 623

                                                                       
Query: 424 ccatctttaaagctttttctgatttcacattgaagagcccagcattggctttaaccccat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccatctttaaagctttttctgatttcacattgaagagcccagcattggctttaaccccat 683

                                                                       
Query: 484 tcatgtttttctttggattcatagtgcacttaaaattatgttctttttccaaaacacttt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcatgtttttctttggattcatagtgcacttaaaattatgttctttttccaaaacacttt 743

                                                                       
Query: 544 atttaggtgtgtctgtgtgcatgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 603
           ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||
Sbjct: 744 atttaggtgtgtctgtgtgcat----atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 799

              
Query: 604 gtg 606
           |||
Sbjct: 800 gtg 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)