BAC Information

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BAC

Clone NameMSMg01-297H24
Chromosome1 (Build37)
Map Location 40,358,881 - 40,359,403
singlet/doubletsinglet
Overlap geneIl1r1
Upstream geneNpas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2
Downstream geneIl1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297H24.T7 (MSMg01no297_h24.b1)MSMg01-297H24.TJ (MSMg01no297_h24.g1)
ACCAG424811AG424812
length712725
length of high quality
(start - end)
614 (65 - 678)528 (65 - 592)
definitionCHROMAT_FILE: MSMg01no297_h24.b1 PHD_FILE: MSMg01no297_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:58 2005CHROMAT_FILE: MSMg01no297_h24.g1 PHD_FILE: MSMg01no297_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGGAGGGGCGGAATTCCCCAA
GCTTTGCCATGAATCTCTGCATCTGTTTCCATCAGTTGCTGGGTGAAGCC
TCTCAGATGACAGTTATGCTAGGTGCCTTTCTGGAAATATAGCAGAATAT
CATGAATAGTGTCAGGGGTGGGCTCTCTCTCTCATGGCATGGGTCTCAAG
ATGGGTCACTCATTGGTTGGCCATTCCTTTGATTTCTACTCCATCTTTAT
CCCCAAACATCTTGTTGGCAGGAGAAATTGTGGGTCTAAGGTTGTGTGGC
TGGGTTGGTGTCCCATTCTTTCCATTTGGAGTCTTTTTCTGTTTGCTGGA
GATGGTCTTTTCAGGTTCCATATTCTCCATTGCTAGGAGTCTCAACTAGG
GTCACTTCAAATATTCCTGGAAGTTTCCATTGTCTTAGACTTCCTGGTCA
TCCCACATATACCCCCCTACACTTTCATCCTCCCTCTAGCTCCCTCCCTC
CCCCTCCCCCCACCCAGTTTTCTCCCTCTATCAATACCCTTGTCTATTCT
ATTTCTCCTTCTCAGTGAGATTCAAGGGCCTCCCCTTGTTATTTAGCTTC
CTTGAGTTCGTGGAGTGCAGTTTGGTTATACTGTACTTCATGGCTAATAT
CTATTTATAAGTGAGTACATATCATGTTTGGATCTGGGTTACCTCACTCA
TGGAAAACATCN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCCGAAATTCAGGACAAGAAGCAAAACGGATAGGA
AGTTATTGCTGAAGAAGGGGTGAGGGGTGTTCCAGGCAAAGGAAAGCACA
CTGGAGTCACCAGGCTAGGCAGCTTTTAAGTAAGCCTTTGATACTTACCT
GGGTATATTAACCGCACATGCGCCGACTCAAAAATATTTGTGTTCTTAAC
AACACAGATAAACGGATAGCGATAAAACTGGCTTTTCACTTCTGAAATGT
TAAGTGTTGTAATGAGTGTGTATTTTCTTTTGGTTGAAGGATGTTCCACA
CTGTTCAAGAGAAGGGGGTGAGGAGGGGGTTAATACAACAGAGTTGGCAA
GACGCTTCAACACAGAATCAGACCTGCAGGCCCAGTTAACTGCTTCATTT
GTATCATACATCACAGCTCAAATAATCACCGTCCCAGATCACGTGGAGAA
CAGCTTGTCGTCAAGACAAATCTGAAACTGTATAACCTCAAGGTGAGAAA
CACTCAGTAGCAAAGAAATCAACATGAATTAGCAGCTTGCAAGAAATTAA
AAAACAGCACCCCCTTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCT
CTCTCTCTCTCTCTCCTCTCCCGTCCTATCTCTCACTCTCTAGCTCATCC
CCAAACCCACAATCTCTCCCATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_h24.g1 MSMg01no297_h24.g1 CHROMAT_FILE:
MSMg01no297_h24.g1 PHD_FILE: MSMg01no297_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:58 2005
         (528 letters)



>mm_chr1_40358675_40359603
          Length = 929

 Score =  934 bits (483), Expect = 0.0
 Identities = 513/523 (98%), Gaps = 1/523 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   aattcaggacaagaagcaaaacggataggaagttattgctgaagaaggggtgaggggtgt 66
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 729 aattcaggacaagaagcaaaacagataggaagttattgctgaagaaggggtgaggggtgt 670

                                                                       
Query: 67  tccaggcaaaggaaagcacactggagt-caccaggctaggcagcttttaagtaagccttt 125
           ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 669 tccaggcaaaggaaagcacactggagtccaccaggctaggcagtttttaagtaagccttt 610

                                                                       
Query: 126 gatacttacctgggtatattaaccgcacatgcgccgactcaaaaatatttgtgttcttaa 185
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 609 gatacttacctgggtatattaactgcacatgcgccgactcaaaaatatttgtgttcttaa 550

                                                                       
Query: 186 caacacagataaacggatagcgataaaactggcttttcacttctgaaatgttaagtgttg 245
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 549 caacacagataaacggatagcgataaaactggcttttaacttctgaaatgttaagtgttg 490

                                                                       
Query: 246 taatgagtgtgtattttcttttggttgaaggatgttccacactgttcaagagaagggggt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 taatgagtgtgtattttcttttggttgaaggatgttccacactgttcaagagaagggggt 430

                                                                       
Query: 306 gaggagggggttaatacaacagagttggcaagacgcttcaacacagaatcagacctgcag 365
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 429 gaggagggggttaatacaacagagttggcaagatgcttcaacacagaatcagacctgcag 370

                                                                       
Query: 366 gcccagttaactgcttcatttgtatcatacatcacagctcaaataatcaccgtcccagat 425
           |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 369 gcccagttaactgctttatttgtatcatacatcacagctcaaataatcactgtcccagat 310

                                                                       
Query: 426 cacgtggagaacagcttgtcgtcaagacaaatctgaaactgtataacctcaaggtgagaa 485
           || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 catgtggataacagcttgtcgtcaagacaaatctgaaactgtataacctcaaggtgagaa 250

                                                      
Query: 486 acactcagtagcaaagaaatcaacatgaattagcagcttgcaa 528
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 acactcagtagcaaagaaatcaacatgaattagcagcttgcaa 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 929
Length adjustment: 10
Effective length of query: 518
Effective length of database: 919
Effective search space:   476042
Effective search space used:   476042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)