BAC Information

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BAC

Clone NameMSMg01-297I16
Chromosome1 (Build37)
Map Location 172,282,689 - 172,314,562
singlet/doubletdoublet
Overlap geneNos1ap
Upstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik
Downstream geneLOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297I16.T7 (MSMg01no297_i16.b1)MSMg01-297I16.TJ (MSMg01no297_i16.g1)
ACCAG424843AG424844
length741745
length of high quality
(start - end)		697 (45 - 741)669 (77 - 745)
definitionCHROMAT_FILE: MSMg01no297_i16.b1 PHD_FILE: MSMg01no297_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:00 2005CHROMAT_FILE: MSMg01no297_i16.g1 PHD_FILE: MSMg01no297_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,313,871 - 172,314,562)(172,282,689 - 172,283,357)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTTGTGTATGTACACATGAAGTGGGGGAGGGGGCTTGGTAACAAATGCC
TTTACCATTAAACTGTCTTGCCAGCCCCAAATTATCTACTTCTACTGGCA
CTACGTTTACATATAAGATCCGTGTACAGCTCTTAGAACATTGCATTAAT
GTTGTTTTGTTGTAACCTGGGTGCTAGAGAGGGGCCAGCACCTCATTCAT
ATTAAGCATGTACTGTACCACTGAACTATACTTCCTCCCATCCCCACATC
CCCACATTAGAATAATTTATCTCTCTCTCTCTCCAGCTGTGTGTGAACTT
CTCGTGGGAAGGGACTATGTCTTCTCTAGCGTGTTATTTTATCTGCTTTG
GAAGGTAGAAAGAGAGGGAACAAAGTGACAGCAGTAATTATCCACAAAGA
TGATAATGGGACCTGCAGCTAATCATAGCATCCACTGGCGTTGAGCACCT
ACGCTGTTCTAGTGGTGTCTGATGGACTCATCCTTCTTAGATCCTCACAT
ACCCTGTGAAGACCATTCGGATGCTCTCTTGTCCCACCCCCATTTGTTGT
TGTTCCAGACCTGAGGATTGAACTCAGGACCTTACACATGTCAGGCAAGC
ATTCGACCACTAACCTACCTACATCCTCTGCCAAATCCAGTCTTTAACTT
GTATCACAAGGCCAGCACCTCACAAGGCAATTATCTTTCTG

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGCAGGAAAATGGCTATGAACA
TTGGCCCTAGGATAGGGCAGACCTAGATTTCAGTAGAGGCACTGTGGGTG
ACTGGCTGCAAGGATTCCGTGCTTAGCCACATCTTCTCCCAGCTCTGGCT
CCTTGCTCTATAGCTGTGAAATGGGAGTGGTCATACTGCCGACCCTCATT
CACAGAGGTTAAAGGAAGGATGCGGGGACTAACTTATAAAGTGGTTGATA
AGCAACAGCTGTTTAGACTGTGTCCATATTTGTCACCGTGTTTCCCTTCT
CTGGGACCTTTACTAAATTTTCCCCAGTTGGCAATGGCTTTAATACTTTT
ATCCAGCTACCTCACTTATATTTATTTTATTAATTCCTTCTTAAAGGAAT
TAATTCCTTTTTAAACATTTCCTCATCCTTCAGTAGTTCAACTAGCCTAT
CTCCAGATCTCTTATTGCTCTGGTTGGTTGAAACTGTGGAAAGAATATTA
ACTTTGGGAAGAGAAAGATCCAGGATCAAGTCATAGGCCTGCTACTTCCT
AGCTGCTGGGCTTAAGCAAGACACTTAAATGATACAACCTTTTGTTCCTG
CATCTAAAACAGCACAGCAATGACTTCTATCTGGCACTATCTTAAATATT
AACATATGACTACTGCATTTAAGCTGACATATGACTACTGCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_i16.b1 MSMg01no297_i16.b1 CHROMAT_FILE:
MSMg01no297_i16.b1 PHD_FILE: MSMg01no297_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:00 2005
         (697 letters)



>mm_chr1_172313551_172314647
          Length = 1097

 Score = 1330 bits (688), Expect = 0.0
 Identities = 691/692 (99%)
 Strand = Plus / Minus

                                                                        
Query: 6    aatttgtgtatgtacacatgaagtgggggagggggcttggtaacaaatgcctttaccatt 65
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 aatttgtgtgtgtacacatgaagtgggggagggggcttggtaacaaatgcctttaccatt 953

                                                                        
Query: 66   aaactgtcttgccagccccaaattatctacttctactggcactacgtttacatataagat 125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952  aaactgtcttgccagccccaaattatctacttctactggcactacgtttacatataagat 893

                                                                        
Query: 126  ccgtgtacagctcttagaacattgcattaatgttgttttgttgtaacctgggtgctagag 185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892  ccgtgtacagctcttagaacattgcattaatgttgttttgttgtaacctgggtgctagag 833

                                                                        
Query: 186  aggggccagcacctcattcatattaagcatgtactgtaccactgaactatacttcctccc 245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832  aggggccagcacctcattcatattaagcatgtactgtaccactgaactatacttcctccc 773

                                                                        
Query: 246  atccccacatccccacattagaataatttatctctctctctctccagctgtgtgtgaact 305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772  atccccacatccccacattagaataatttatctctctctctctccagctgtgtgtgaact 713

                                                                        
Query: 306  tctcgtgggaagggactatgtcttctctagcgtgttattttatctgctttggaaggtaga 365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712  tctcgtgggaagggactatgtcttctctagcgtgttattttatctgctttggaaggtaga 653

                                                                        
Query: 366  aagagagggaacaaagtgacagcagtaattatccacaaagatgataatgggacctgcagc 425
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652  aagagagggaacaaagtgacagcagtaattatccacaaagatgataatgggacctgcagc 593

                                                                        
Query: 426  taatcatagcatccactggcgttgagcacctacgctgttctagtggtgtctgatggactc 485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592  taatcatagcatccactggcgttgagcacctacgctgttctagtggtgtctgatggactc 533

                                                                        
Query: 486  atccttcttagatcctcacataccctgtgaagaccattcggatgctctcttgtcccaccc 545
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532  atccttcttagatcctcacataccctgtgaagaccattcggatgctctcttgtcccaccc 473

                                                                        
Query: 546  ccatttgttgttgttccagacctgaggattgaactcaggaccttacacatgtcaggcaag 605
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472  ccatttgttgttgttccagacctgaggattgaactcaggaccttacacatgtcaggcaag 413

                                                                        
Query: 606  cattcgaccactaacctacctacatcctctgccaaatccagtctttaacttgtatcacaa 665
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412  cattcgaccactaacctacctacatcctctgccaaatccagtctttaacttgtatcacaa 353

                                            
Query: 666  ggccagcacctcacaaggcaattatctttctg 697
            ||||||||||||||||||||||||||||||||
Sbjct: 352  ggccagcacctcacaaggcaattatctttctg 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no297_i16.g1 MSMg01no297_i16.g1 CHROMAT_FILE:
MSMg01no297_i16.g1 PHD_FILE: MSMg01no297_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:00 2005
         (669 letters)



>mm_chr1_172282489_172283557
          Length = 1069

 Score = 1294 bits (669), Expect = 0.0
 Identities = 669/669 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgcaggaaaatggctatgaacattggccctaggatagggcagacctagatttcagtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgcaggaaaatggctatgaacattggccctaggatagggcagacctagatttcagtag 260

                                                                       
Query: 61  aggcactgtgggtgactggctgcaaggattccgtgcttagccacatcttctcccagctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcactgtgggtgactggctgcaaggattccgtgcttagccacatcttctcccagctct 320

                                                                       
Query: 121 ggctccttgctctatagctgtgaaatgggagtggtcatactgccgaccctcattcacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctccttgctctatagctgtgaaatgggagtggtcatactgccgaccctcattcacaga 380

                                                                       
Query: 181 ggttaaaggaaggatgcggggactaacttataaagtggttgataagcaacagctgtttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttaaaggaaggatgcggggactaacttataaagtggttgataagcaacagctgtttag 440

                                                                       
Query: 241 actgtgtccatatttgtcaccgtgtttcccttctctgggacctttactaaattttcccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgtgtccatatttgtcaccgtgtttcccttctctgggacctttactaaattttcccca 500

                                                                       
Query: 301 gttggcaatggctttaatacttttatccagctacctcacttatatttattttattaattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttggcaatggctttaatacttttatccagctacctcacttatatttattttattaattc 560

                                                                       
Query: 361 cttcttaaaggaattaattcctttttaaacatttcctcatccttcagtagttcaactagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttcttaaaggaattaattcctttttaaacatttcctcatccttcagtagttcaactagc 620

                                                                       
Query: 421 ctatctccagatctcttattgctctggttggttgaaactgtggaaagaatattaactttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctatctccagatctcttattgctctggttggttgaaactgtggaaagaatattaactttg 680

                                                                       
Query: 481 ggaagagaaagatccaggatcaagtcataggcctgctacttcctagctgctgggcttaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaagagaaagatccaggatcaagtcataggcctgctacttcctagctgctgggcttaag 740

                                                                       
Query: 541 caagacacttaaatgatacaaccttttgttcctgcatctaaaacagcacagcaatgactt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caagacacttaaatgatacaaccttttgttcctgcatctaaaacagcacagcaatgactt 800

                                                                       
Query: 601 ctatctggcactatcttaaatattaacatatgactactgcatttaagctgacatatgact 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctatctggcactatcttaaatattaacatatgactactgcatttaagctgacatatgact 860

                    
Query: 661 actgcattt 669
           |||||||||
Sbjct: 861 actgcattt 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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