Query= MSMg01no297_j12.b1 MSMg01no297_j12.b1 CHROMAT_FILE:
MSMg01no297_j12.b1 PHD_FILE: MSMg01no297_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:04 2005
(700 letters)
>mm_chr1_152003521_152004620
Length = 1100
Score = 1212 bits (627), Expect = 0.0
Identities = 684/707 (96%), Gaps = 9/707 (1%)
Strand = Plus / Plus
Query: 3 gaattccattattattact-aaattaagtttgtcttaagtcttgaaatggagtaagaccg 61
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gaattccattattaagacacaaattaagtttgtcttaagtcttgaaatggagtaagaccg 253
Query: 62 aggatgaagtagagtcagaattggggtacagacgaggcagaattagaaatgggaggaggg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aggatgaagtagagtcagaattggggtacagacgaggcagaattagaaatgggaggaggg 313
Query: 122 actgctcatggatcatgaatggctagggatgggctcagaggaagctagcacatgtataaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 actgctcatggatcatgaatggctagggatgggctcagaggaagctagcacatgtataaa 373
Query: 182 tgcacactaaactattactcatgtgattcagccaaatggaatcttatattcaaagaacat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgcacactaaactattactcatgtgattcagccaaatggaatcttatattcaaagaacat 433
Query: 242 taggaaatgcataggcagaggcagaatatcctctaagactctccagactaagttcaaggt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 taggaaatgcataggcagaggcagaatatcctctaagactctccagactaagttcaaggt 493
Query: 302 tagtctggtctatgtagacagttccagcacagttgtggctacatagagatatcctgcaat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tagtctggtctatgtagacagttccagcacagttgtggctacatagagatatcctgcaat 553
Query: 362 atatattattatatatattgtattatatgtaacatatataatatatattattatatgtat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 atatattattatatatattgtattatatgtaacatatataatatatattattatatgtat 613
Query: 422 tatattatatgtaaaatatataatattatatatatacat------atatatatgtgtgtg 475
||||||||||||||||||||||||| ||||||||| || |||||||| | | |
Sbjct: 614 tatattatatgtaaaatatataatactatatatatgtatgtatgtatatatatatatata 673
Query: 476 tgtgtgtgtatatatata--tatatatatatatatgatttttattcatactgttcccaaa 533
| | | | |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tatatatatatatatatacatatatatatatatatgatttttattcatactgttcccaaa 733
Query: 534 atgttaaggaggtcaatgacctagatctataatttttatatcgactcaagtctttcccaa 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 atgttaaggaggtcaatgacctagatctataatttttatatcgactcaagtctttcccaa 793
Query: 594 ttctctaattccttgaaaattccagatatgcatcaagtccttcccaggatacatcactct 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ttctctaattccttgaaaattccagatatgcatcaagtccttcccaggatacatcactct 853
Query: 654 cctatgcatgtctatgagtctcctaatctcccagatcacacctgtca 700
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 cctatgcatgtctatgagtctcctaatctcccagatcacacctgtca 900
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 100
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space: 752100
Effective search space used: 752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_j12.g1 MSMg01no297_j12.g1 CHROMAT_FILE:
MSMg01no297_j12.g1 PHD_FILE: MSMg01no297_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:04 2005
(569 letters)
>mm_chr1_152183684_152184652
Length = 969
Score = 708 bits (366), Expect = 0.0
Identities = 488/570 (85%), Gaps = 65/570 (11%)
Strand = Plus / Minus
Query: 1 agataaagaagtttgctactggtgtccattagagtcgccggtgtcaccatagagacatga 60
|||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 895 agataaagaagtttgctactggtgtccattagagtcaccggcatcaccatag-------- 844
Query: 61 aggtacaaaggtgtaagcagttacttctgtttcttgtataaaggcttgctttctttccct 120
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||
Sbjct: 843 aggtacaaaggtataagcagttacctctgtctcttgtataaaggcttgctttctttacct 784
Query: 121 tccttatgtttcttgctctctagagctctctatggacgttgcagactatcagtaatgttt 180
||||| |||||||||||||||||| |||||||||||| ||||| ||||||||||||||||
Sbjct: 783 tccttctgtttcttgctctctagaactctctatggacattgcatactatcagtaatgttt 724
Query: 181 tctgaacaaatgaataaattagcttttcaatttacaattcaaatttactattcctttcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tctgaacaaatgaataaattagcttttcaatttacaattcaaatttactattcctttcaa 664
Query: 241 aattccctagcattatataacaaacattagataacaaacattagataacaaacattagat 300
|||| |||||
Sbjct: 663 aatttcctag-------------------------------------------------- 654
Query: 301 aacaaacattagataacaaacaag-tatccttcaggtctactacaactattatttgagta 359
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 653 ------cattagataacaaacaagttatccttcaggtctactacaattattatttgagta 600
Query: 360 atcacgtgacatggtatataacattttaaactttttaacttaaaactctttctttggtaa 419
|||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 599 atcatgtaacatggtatataacattttaaactttttaacttaaaactctttctttagtaa 540
Query: 420 atcaaaaatgatctctggggtggatctgggagaaattaagggtggaattgggggtgaata 479
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 539 atcaaaaatgatctctggggtggatctgggagaagttaagggtggaattgggggtgaata 480
Query: 480 tgatcaaaatacattcttaaaattctcaaaaaattaataaatgtattttttaatgatttc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tgatcaaaatacattcttaaaattctcaaaaaattaataaatgtattttttaatgatttc 420
Query: 540 ttctcctatggaattaatcaacagattaag 569
||||||||||||||||||||||||||||||
Sbjct: 419 ttctcctatggaattaatcaacagattaag 390
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
