Query= MSMg01no297_k13.b1 MSMg01no297_k13.b1 CHROMAT_FILE:
MSMg01no297_k13.b1 PHD_FILE: MSMg01no297_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:09 2005
(508 letters)
>mm_chr1_63708677_63709583
Length = 907
Score = 872 bits (451), Expect = 0.0
Identities = 493/507 (97%), Gaps = 3/507 (0%)
Strand = Plus / Minus
Query: 3 gaattcacaagggatttgcccaaggcaacaaagtttgactcataaaaccctctttacgta 62
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 707 gaattcacaagggatttggagaaggcaacgaagtttgactcataaaaccctctttacgta 648
Query: 63 taatagtttgaaacaatgaaccgaatcaatggggaaacaagcatgcaggaccaaagaaat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 taatagtttgaaacaatgaaccgaatcaatggggaaacaagcatgcaggaccaaagaaat 588
Query: 123 ctttatattatagtgaaaaataatcttttcttataatggacggtgtcgaaatatggatgt 182
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 587 ctttatattatagtgaaaaacaatcttttcttataatggacggtgtcaaaatatggatgt 528
Query: 183 aatttatcacagtggatgcattacaataatttaaccattaaacaacagaaaggtgttctt 242
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 527 aatttatcacagtgcatgcattacaataatttaaccattaaactacagaaaggtgttctt 468
Query: 243 tatataaccattgtgtgtctcagccagatagagaattaattcgaaattacataaagtaca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tatataaccattgtgtgtctcagccagatagagaattaattcgaaattacataaagtaca 408
Query: 303 attttttacactgaaataagtttttcccctcataatcactattttataagattgaatatc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 attttttacactgaaataagtttttcccctcataatcactattttataagattgaatatc 348
Query: 363 atggtttttttttttaaatgcgacttttaagtgacttgctcaggccaccaagaaaataac 422
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 347 atggttttttttttt-aatgtgacttttaagtgacttgctcaggccaccaagaaaatagc 289
Query: 423 aaacacgtataatgaaatgtgtcagaattctgtataatatgcctttgtctgctg-aaaaa 481
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 288 -aacacgtataatgaaatgtgtcagaattctgtataacatgcctttgtctgctgaaaaaa 230
Query: 482 aaatgaagttaaacttagaaagattgt 508
|||||||||||||||||||||||||||
Sbjct: 229 aaatgaagttaaacttagaaagattgt 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 907
Length adjustment: 10
Effective length of query: 498
Effective length of database: 897
Effective search space: 446706
Effective search space used: 446706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_k13.g1 MSMg01no297_k13.g1 CHROMAT_FILE:
MSMg01no297_k13.g1 PHD_FILE: MSMg01no297_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:09 2005
(471 letters)
>mm_chr1_63546552_63547418
Length = 867
Score = 833 bits (431), Expect = 0.0
Identities = 455/471 (96%), Gaps = 14/471 (2%)
Strand = Plus / Plus
Query: 1 ctaggaacaagtctcagtcaatgggaggtccctcttcagagatgttattctaaatattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaggaacaagtctcagtcaatgggaggtccctcttcagagatgttattctaaatattta 260
Query: 61 tttaaaatcttttcatacacatattttggtcatattctttactctcccccccccccaagt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 tttaaaatcttttcatacacatattttggtcatattctttactctccccccc----aagt 316
Query: 121 ccttccatacccaccctccataaatacctcttttcacattcttcctctctctcttaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ccttccatacccaccctccataaatacctcttttcacattcttcctctctctcttaaaaa 376
Query: 181 acaaaaaaagacaagaaaagctaaaatcaaaccaaaacacgaaaaatataagaaatgcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acaaaaaaagacaagaaaagctaaaatcaaaccaaaacacgaaaaatataagaaatgcac 436
Query: 241 atgtgcatgttttcacacacacacacacacacacacacacacacacacacacacacacaa 300
||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atgtgcatg----------cacacacacacacacacacacacacacacacacacacacaa 486
Query: 301 acacacacaaacacacacatacaccgaaaagacaaaacaaacaaatatagaatctgtttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 acacacacaaacacacacatacaccgaaaagacaaaacaaacaaatatagaatctgtttc 546
Query: 361 atgttggccaactactcctgtgtttgtgacctgccctggggtatggctgaccttcccagt 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 547 atgttggccaactactcctgtgtttgtgacctgccctggggtatggctggccttcccagt 606
Query: 421 gtcagagaggatgcgtttttactgtaggggtttccatcgttttcctcctca 471
||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 607 gtcagagaggatgtgtttttactgtaggggtttccatcgttttcctcctca 657
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 867
Length adjustment: 10
Effective length of query: 461
Effective length of database: 857
Effective search space: 395077
Effective search space used: 395077
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
