BAC Information

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BAC

Clone NameMSMg01-298H16
Chromosome1 (Build37)
Map Location 10,249,985 - 10,250,566
singlet/doubletsinglet
Overlap genenone
Upstream geneSntg1, EG620853, LOC665138, Rrs1, Adhfe1, LOC620542, 3110035E14Rik, Mybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1
Downstream geneCpa6, LOC433271, C030045D06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298H16.T7 (MSMg01no298_h16.b1)MSMg01-298H16.TJ (MSMg01no298_h16.g1)
ACCAG425521AG425522
length749753
length of high quality
(start - end)
595 (46 - 640)584 (78 - 661)
definitionCHROMAT_FILE: MSMg01no298_h16.b1 PHD_FILE: MSMg01no298_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:10 2005CHROMAT_FILE: MSMg01no298_h16.g1 PHD_FILE: MSMg01no298_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCTGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGGAGTCCACCCTCTTGAGCCCATTATATATATTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGACCTTTCCCAATCTGTTGGTGGCCTTT
TTGTCTTATTGACGGTGTCTTTTGTCTTGCAGAAGCTTTGCAGTTTCATT
AGGTCCCAATTGTCAATCCTCGATCTTAAAGCACAAGCCATTGCTGTTCT
ATTCAGGAATTTTTCCCCTGTGCTCATACCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGCTTTATGTGAAGTTACTTGATC
CACTTAGATTTGACCTTAGTACAAGGAGATAGCAATGGATCAATTCACAT
TCTTCTACATGTTAACAACCAGTTGTGCAAGCACCATTTGTTGAAAATGC
TGTCTTTCTTCCACTTGATAGTTTTAGCTCCCTTTTGTTGTCGAATTGAT
TTGGCTAGGACTTCAAGTACTATGTTGAATAGGTATGGAGAAAGTGGCCA
GCCTTGTCTAGTCCCTGATTTTGGTGGGATTGCTTCAAGCTTCTCACCAT
TTACTTTGATGTTGGCTACTGCTTTGCCTTAGATTGCTTTTATCATGTTT
AGGTATGGGACTTGAATTCCTGATCTTTCCAAGACTTTTATCTTGAATG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTTCTGACTTCTGGGGATAT
AGAGGAGCACGAAGTGCGGTGCTTCTCACTTAGAAGTGCAGTGTGCCACA
CAGGTCATGTCTGTATTTTCTCCTTCAGGAGTGTGTGTATGGGGCTGTAA
ATAAGAGCGAACTATAGTGATATTACATGTATGGAAATGCTACAATGACC
CCCCCCCCCTTTTAGTTTTGTTTTAAAGACAGAATTTCATGTAGCCCAGT
GTAGTGGCTGGTTTTGTGTATCATTTTGACAGGCTAGAGTTATCACAGAG
AAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAGCTGTGGGGCA
TTTTCTCAATTAGTGACAAGGGGGAGGTCCCTTGTGGGTGGTGCCATCTC
CGGGCTGGTAATCTTGGTTCTATAAGAGAGCAGACTGAGCAAGCCAGTGG
AAGCAAGCCAGTAAAGAACATCCCTCCATGGTCTCTGCATCAGCTCCTGT
TTTCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGC
ATTGGGGAAGTGTAAGCTGAATAAATCCTTTCCTTCCCAACTTGCTATTT
GGTCATGGGTTCTAAGACACCCAGTCTGGACTCTAGCTATACAACTGATA
TAGCCTTGAACCTCTGACTCCTGAGTGGCTAGTTTATAGGTATGTATTAC
ACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_h16.g1 MSMg01no298_h16.g1 CHROMAT_FILE:
MSMg01no298_h16.g1 PHD_FILE: MSMg01no298_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:11 2005
         (584 letters)



>mm_chr1_10249785_10250771
          Length = 987

 Score =  992 bits (513), Expect = 0.0
 Identities = 566/587 (96%), Gaps = 8/587 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgttctgacttctggggatatagaggagcacgaagtgcggtgcttctcacttagaagt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgttctgacttctgggaatatagaggagcacgaagtgcggtgcttctcacttagaagt 260

                                                                       
Query: 61  gcagtgtgccacacaggtcatgtctgtattttctccttcaggagtgtgtgtatggggctg 120
           |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 261 gcagtgtgccacacaggtcatgtctgcattttctccttcaggagcgtgtgtatggggctg 320

                                                                       
Query: 121 taaataagagcgaactatagtgatattacatgtatggaaatgctacaatgaccccccccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaataagagcgaactatagtgatattacatgtatggaaatgctacaatgaccccccccc 380

                                                                       
Query: 181 cc---ttttagttttgttttaaagacagaatttcatgtagcccagtgtagtggctggttt 237
           ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccctttttagttttgttttaaagacagaatttcatgtagcccagtgtagtggctggttt 440

                                                                       
Query: 238 tgtgtatcattttgacaggctagagttatcacagagaaaggagcttcagttgaggaaatg 297
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgtatcaacttgacaggctagagttatcacagagaaaggagcttcagttgaggaaatg 500

                                                                       
Query: 298 cctccatgagatccagctgtggggcattttctcaattagtgacaagggggaggtcccttg 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctccatgagatccagctgtggggcattttctcaattagtgacaagggggaggtcccttg 560

                                                                       
Query: 358 tgggtggtgccatctccgggctggtaatcttggttctataagagagcagactgagcaagc 417
           |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 tgggtggtgccatctctgggctggtaatcttggttctataagagagcaggctgagcaagc 620

                                                                       
Query: 418 cagtggaagcaagccagtaaagaacatccctccatggtctctgcatcagctcctgttttc 477
           ||||||||||||||||||||    ||||||||| ||  ||||||||||||||||  ||||
Sbjct: 621 cagtggaagcaagccagtaa----catccctccgtgacctctgcatcagctcctactttc 676

                                                                       
Query: 478 tgacctgcttgagttccagtcctgacttcctttggtgatgaacagcattggggaagtgta 537
           ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 677 tgacctgcttgagttccagtcctgacttc-tttggtgatgaacagcaatggggaagtgta 735

                                                          
Query: 538 agctgaataaatcctttccttcccaacttgctatttggtcatgggtt 584
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 agctgaataaatcctttccttcccaacttgctatttggtcatgggtt 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 987
Length adjustment: 10
Effective length of query: 574
Effective length of database: 977
Effective search space:   560798
Effective search space used:   560798
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)