BAC Information

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BAC

Clone NameMSMg01-298J12
Chromosome1 (Build37)
Map Location 161,255,365 - 161,255,844
singlet/doubletsinglet
Overlap geneRfwd2
Upstream gene6430517E21Rik, Astn1, Pappa2, 4930562F17Rik, EG240853, LOC664972
Downstream geneEG620484, Tnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298J12.T7 (MSMg01no298_j12.b1)MSMg01-298J12.TJ (MSMg01no298_j12.g1)
ACCAG425605AG425606
length744745
length of high quality
(start - end)
199 (126 - 324)469 (76 - 544)
definitionCHROMAT_FILE: MSMg01no298_j12.b1 PHD_FILE: MSMg01no298_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:19 2005CHROMAT_FILE: MSMg01no298_j12.g1 PHD_FILE: MSMg01no298_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGA
ATTCCTAATTTTTTCCAATTTTTTTAAGAATCAAAGCTGCCTCTTTATTT
ACATAAAATTGTAGTGTATACTTCCCTTTTTAACTTTTTATTAAATGTAT
TCATTCAGTTTATAACCCAATATCATCCCTTACCCTCTTCCTGGTACCCT
TCACACAAGTCATCCCCCTATTCTACCTTCTCCTTCTCTTTTGAGAAGGA
GATGATTCAAATAATTTTAAGAAAAAAGTTTAAGGAGATGCTTGTAGGTG
TTTTGCCAGAAAGTTACAATAATTTTTATAATCAAAACTAACTTTTGTGC
CCCTCCTCATAGAATAGTAAGTAAAGGCTGCTTAATATGGAATACAATTA
GCTTTCATAAATTACACTAAGAAGAGAAATAGGATTGAGACAAATTTGTG
ATCAAGATTCATTCTAAATCAAGTCCAAGGATAAAGTCACGGGTGTGCAC
TATGATAAAGTGAGACCATGTGAAACTGTTGCTTTGAATTTATAATGAAC
ATATAGAATAACACACTACTTTGAAATTACTAATGACATCTTTCTGTATG
TCCCCTATTATGTAACATTTTATCTATGAAGTTATTTCTTCTTACATAGA
GAATTTTTTTTGTCTAAAATGTATAAAATGCTGAAAACAATAATAAAGTT
ATGGTGTAGCCATTTCTGTTACATCCCATATATGTGGTTATTTN
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTAATGGAGATAAGGAACCAAGTT
AAAAAAATAAGGAAGCCTGTAGAGAGAAATTACATATGGATTTACTAGAT
TATGAGAGGAATAGACAAAATATGGAACTACCCCTAGTGTTAGAAAGGTT
GTATAGTTTGACAACAAATTGTTCACATCACTGACATTTTACTACTTTAA
AGAGTTTTACAAGGGACATTTGCTGGGGAGAAGCAGACACACTTAAAAAG
TTCTCTTTAAAATAGATTTTACTGATTTTCTGGTTTAGGTTATTATAAAA
ATCAAGAAGTCATTTAAAGCCAATAATCATTCTACTGCTACACTGAAGGT
GGACTTGTATAGTAACACACTGGGTTACTTACTCAAATAAGTTATTTTTT
CTCTCTACTGCACCAAATATTACTTCTTCAGGACAAGTAGTGACAGAAAC
CAAATTTGAAGTTCATATGTTATTAAATTATAAGCATAACTTACGAGGGC
CTAACACAAAGTAATATTTATAAGTAATATAAAAATGAACAAAGCAGGTA
AGATACACGTATTTTCAATGAAAGACATGCAAATCTGTTGCTATTTGAGA
AAGTAATCCAAGGTCCTTTTTTTGTTTTTTTGCATAACTATCTCATCATT
GTTAAGACCTCTGTATCAAGCTCTCCCTCCAAGGAGAATACTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_j12.g1 MSMg01no298_j12.g1 CHROMAT_FILE:
MSMg01no298_j12.g1 PHD_FILE: MSMg01no298_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:19 2005
         (469 letters)



>mm_chr1_161254993_161255861
          Length = 869

 Score =  789 bits (408), Expect = 0.0
 Identities = 457/484 (94%), Gaps = 20/484 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaatggagataaggaaccaagttaaaaaaataaggaagcctgtagagagaaattacat 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 tctaagggagataaggaaccaagttaaaaaaataaggaagcctgtagagagaaattacat 793

                                                                       
Query: 61  atggatttactagattatgagaggaatagacaaaatatggaactacccctagtgttagaa 120
           |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 792 atggatttactagattatgagaggaataaacaaaatatggaaccacccctagtgttagaa 733

                                                                       
Query: 121 aggttgtatagtttgacaacaaattgttcacatcactgacattttactacttt---aaag 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 732 aggttgtatagtttgacaacaaattgttcacatcactgacattttactactttaaaaaag 673

                                                                       
Query: 178 ---------agttttacaagggacatttgctggggagaagcagacacacttaaaaagttc 228
                    ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 672 caactaaaaagttttacaagggacatttgctgggaagaagcagacacacttaaaaagttc 613

                                                                       
Query: 229 tctttaaaatagattttactg----attttctggtttaggttattataaaaatcaagaag 284
           |||||||||||||||||||||    |    ||||||||||||||||||||||||||||||
Sbjct: 612 tctttaaaatagattttactgaaaaa----ctggtttaggttattataaaaatcaagaag 557

                                                                       
Query: 285 tcatttaaagccaataatcattctactgctacactgaaggtggacttgtatagtaacaca 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tcatttaaagccaataatcattctactgctacactgaaggtggacttgtatagtaacaca 497

                                                                       
Query: 345 ctgggttacttactcaaataagttattttttctctctactgcaccaaatattacttcttc 404
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 496 ctgggttacttactcaaataagttattttttctctctattgcaccaaatattacttcttc 437

                                                                       
Query: 405 aggacaagtagtgacagaaaccaaatttgaagttcatatgttattaaattataagcataa 464
           ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 436 aggacaagtagtgccagaaaccaaatttgaagttcaaatgttattaaattataagcataa 377

               
Query: 465 ctta 468
           ||||
Sbjct: 376 ctta 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)