TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGGAGCTACTTGTTATAGTTGTCTCTGGTTAGAGCTTGTTCCTC
AGGTGATTATGTTAGCCTCTATCAGCAGACCTGGGAGACTAGCTCTATCC
TTAGTTTCAGTGGTCAGAGTACTCTCTGCAGGCAAGCTCTCCTCTTGCAG
GGAAGGTGCCCAGATATCTGGTGTTTGAACCTGCCTCCTGGCAGAAGTTG
TGTTCCACTCACCAAAGGTCTTAGGATCCCGTAGGGGATCCTGTGTGGGT
CCTTGCGGGTGTCTAGAGACTCCCCGGGCTAGGGACCCCGGTGCTGCAGT
GGGCCGGAAGGGACTTGAGCCCTGGATCAGGCCGGATTATCTGCTTCCTT
AATTAATGCAGTCTCAGGTCCCGTGCAATTGGATTGGAGCAGGCGCTGTT
TTCCATTCACCAGAGGTCTTAGGATTCCGTGGCGGATCCTGTGTGGGTCC
TTGCGGGTGTCCGCAGACTTCCCGGGCCAGGGACCACAGTGCTGCAGTGG
GCCGGAAGGGCTCAAATATACTTTCAAAAAGGAACAGTTTACCAAACAGG
ACCAAAAGGCAGTATTTTCACAAATGAACAGCATGATAAAGTGCTACGCA
TACTCCAGTGAAGTTTGCTTGCCAGGCCGAGAAACTTGGGAGCACTCACA
AGGCAAAGAGTTTCACGGAAACTCACCTCCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTAACAGAAGCTAGTAAGACACA
CAAATAACTTCACAAAAACCTAAAAATGCTACAAAAGTATTTCATATTCA
GGTACAGAATCTGTACAGCCTTTTCCTAGTTGTACTGCAGTGTGGCTATG
AATCACCTGCTCTACATTACATGTCATTTACTGGTTACTAGGAGTGTGAC
TTGTTGTTTTTTTTTTTTTTTTTTTGCTTTCTCCTTAATCCCAGTCCTGG
GGATTGAATCTAGTACCCCTGCTCACATACTGAACAAGCATTCTGTATTC
TCAGCCTGATTTCATGAGTTTCTGAAGACAAGTCATTTTCTTTAAATGAG
GGAGTGGGGAGAGAAAAATCTTAACCACATGCTTATTTCTTTCTATCATG
AAAGGAAAATTTATTTATTATTAAAAATTACAATTGTATTTATCTTACCC
TTCTGAAAATAAGAGAGCTAGGGAAGAAAAAAAAAGGAAATGGCAAACTT
CGCACACTAGCACTAGTTATTATTAAACGAGCCTTTTCATTGACTCAGAG
ATATCTATTCCAGCTTCCTAACAAAGTCTATAAATACTGCCAGCCTGCAC
TATTGTGAGGCTCTGTCTCAACAAACCCCAAAACAATCCTATACCACCTA
TCAACAACCAAAGTCAAGCCAGCAAGTTAGCAAGCAAGCAG

Query= MSMg01no298_k03.g1 MSMg01no298_k03.g1 CHROMAT_FILE:
MSMg01no298_k03.g1 PHD_FILE: MSMg01no298_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:22 2005
         (564 letters)



>mm_chr1_107618175_107619137
          Length = 963

 Score = 1019 bits (527), Expect = 0.0
 Identities = 551/565 (97%), Gaps = 12/565 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaacagaagctagtaagacacacaaataacttcacaaaaacctaaaaatgctacaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tttaacagaagctagtaagacacacaaataacttcacaaaaacctaaaaatgctacaaaa 699

                                                                       
Query: 61  gtatttcatattcaggtacagaatctgtacagccttttcctagttgtactgcagtgtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gtatttcatattcaggtacagaatctgtacagccttttcctagttgtactgcagtgtggc 639

                                                                       
Query: 121 tatgaatcacctgctctacattacatgtcatttactggttactaggagtgtgacttgttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 638 tatgaatcacctgctctacattacatgtcatttactggttactaggagtgtgacttgatg 579

                                                                       
Query: 181 tttttttttttttttttttgctttctccttaatcccagtcctggggattgaatctagtac 240
           ||||||||||          ||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tttttttttt----------ctttctccttaatcccagtcctggggattgaatctagtac 529

                                                                       
Query: 241 ccctgctcacatactgaacaagcattctgtattctcagcctgatttcatgagtttct-ga 299
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 528 ccctgctcacatattgaacaagcattctgtattctcagcctgatttcatgagttt-tgga 470

                                                                       
Query: 300 agacaagtcattttctttaaatgagggagtggggagagaaaaatcttaaccacatgctta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agacaagtcattttctttaaatgagggagtggggagagaaaaatcttaaccacatgctta 410

                                                                       
Query: 360 tttctttctatcatgaaaggaaaatttatttattattaaaaattacaattgtatttatct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tttctttctatcatgaaaggaaaatttatttattattaaaaattacaattgtatttatct 350

                                                                       
Query: 420 tacccttctgaaaataagagagctagggaagaaaaaaaaaggaaatggcaaacttcgcac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tacccttctgaaaataagagagctagggaagaaaaaaaaaggaaatggcaaacttcgcac 290

                                                                       
Query: 480 actagcactagttattattaaacgagccttttcattgactcagagatatctattccagct 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 actagcactagttattattaaacgagccttttcattgactcagagatatctattccagct 230

                                    
Query: 540 tcctaacaaagtctataaatactgc 564
           |||||||||||||||||||||||||
Sbjct: 229 tcctaacaaagtctataaatactgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 963
Length adjustment: 10
Effective length of query: 554
Effective length of database: 953
Effective search space:   527962
Effective search space used:   527962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)