Query= MSMg01no298_k07.b1 MSMg01no298_k07.b1 CHROMAT_FILE:
MSMg01no298_k07.b1 PHD_FILE: MSMg01no298_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:22 2005
(562 letters)
>mm_chr1_37530680_37531644
Length = 965
Score = 955 bits (494), Expect = 0.0
Identities = 544/562 (96%), Gaps = 3/562 (0%)
Strand = Plus / Minus
Query: 4 ggaattctcactgtctccctagtatgtaaaatcaagtgtgtttctggtggtggtgaacct 63
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ggaattctcactgtctctttagtatgtaaaatcaagtgtgtttctggtggtggtgaacct 667
Query: 64 tctgacaggaagcagctagagagaagggaaatgtccagttgaccattctgagacactaga 123
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tctgacataaagcagctagagagaagggaaatgtccagttgaccattctgagacactagg 607
Query: 124 ccgtagactctgcagggtaaggctgttgtccaagagacagaaataaatgccgtgagccct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccgtagactctgcagggtaaggctgttgtccaagagacagaaataaatgccgtgagccct 547
Query: 184 ggcttctacctgataacaacattctgcgtcagtacagaaggaagaataccaactgagctg 243
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 546 ggcttctacctggtaacaacattctgcgtcagtacagaaggaagaataccaaccgagctg 487
Query: 244 ctggaaaaatctcagac---gagggttctgaaaggaggaatttatgcagaaacaacccga 300
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 486 ctggaaaaatctcagactctgagggttctgaaaggaggaagttatgcagaaacaacccga 427
Query: 301 ggcagcctttgctgtgtcaggacactagtctcagaggagtcagcctaagacaggaggaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggcagcctttgctgtgtcaggacactagtctcagaggagtcagcctaagacaggaggaca 367
Query: 361 aaggacatgaagcccaaacacttccagagttcaggtcagattagacctgagcggcatgcc 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 366 aaggacatgaagcccaaacacttccagagttcaggtcagattagacttgagcggcatgcc 307
Query: 421 ctagtggcctcttcagaccctttcgtgtggtatgtggtccgatgtgaaattcatgagtta 480
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 306 ttagtggcctcttcagaccctttcgtgtggtatgtggtccgatattaaattcatgagtta 247
Query: 481 tttaaagctgtacacgaaaatgctttctcattctgtagaggcctttctttgagacagggt 540
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 246 tttaaagctgtacatgaaaatgctttctcattctgtaaaggcctttctttgagacagggt 187
Query: 541 gtcgctgtgtagccctggctgg 562
||| ||||||||||||||||||
Sbjct: 186 gtcactgtgtagccctggctgg 165
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 965
Length adjustment: 10
Effective length of query: 552
Effective length of database: 955
Effective search space: 527160
Effective search space used: 527160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_k07.g1 MSMg01no298_k07.g1 CHROMAT_FILE:
MSMg01no298_k07.g1 PHD_FILE: MSMg01no298_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:22 2005
(504 letters)
>mm_chr1_37348063_37348967
Length = 905
Score = 888 bits (459), Expect = 0.0
Identities = 492/505 (97%), Gaps = 5/505 (0%)
Strand = Plus / Plus
Query: 1 attcactaggaagatgtaacaagacagacagacacatggtacctgctgagcacaggtaac 60
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 205 attcactaggaagatgtaaca----agacagacacatggtacctgctaagcacaggtaac 260
Query: 61 cagccacgtggcagaatgtaggttaaaataagttgtgattctagtcggagaagagcctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagccacgtggcagaatgtaggttaaaataagttgtgattctagtcggagaagagcctag 320
Query: 121 ctatatggccaaggtatttgtaaatagatttgagactgatccttatttctgggagcgtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatatggccaaggtatttgtaaatagatttgagactgatccttatttctgggagcgtgg 380
Query: 181 ggctgggaggaagaatcaggacttaagttcaatacccaagtgtgaggattaaagatgttt 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 ggctgggaggaagaatcaggacttaagttcaatacccatgtgtgaggattaaagatgttt 440
Query: 241 ggcatctt-cccagtgtctggcattaagatcatgccatccattccccgaactaagttact 299
|||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcatcttccccagcggctggcattaagatcatgccatccattccccgaactaagttact 500
Query: 300 ccatattgtgtagaagagtgattgctcagactgtgcctttttgacaagcaacttttgact 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccatattgtgtagaagagtgattgctcagactgtgcctttttgacaagcaacttttgact 560
Query: 360 ctgctttgaggatggaggaagactgtggacctcagcgaacatgtcaacatctgtcagcac 419
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgctttgaggatggaggaagactatggacctcagcgaacatgtcaacatctgtcagcac 620
Query: 420 aacctatgtggcacagactgataaaatagattatttctcgaagtaggaaagaggtcacct 479
|||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 621 aacctacgtggcacagactgataaaatagattgtttctcaaagtaggaaagaggtcacct 680
Query: 480 tataaatttatcagggtggattggg 504
|||||||||||||||||||||||||
Sbjct: 681 tataaatttatcagggtggattggg 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 905
Length adjustment: 10
Effective length of query: 494
Effective length of database: 895
Effective search space: 442130
Effective search space used: 442130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
