BAC Information

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BAC

Clone NameMSMg01-298N02
Chromosome1 (Build37)
Map Location 180,863,471 - 180,863,712
singlet/doubletsinglet
Overlap genenone
Upstream geneEG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b
Downstream geneSmyd3, LOC666354, LOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298N02.T7 (MSMg01no298_n02.b1)MSMg01-298N02.TJ (MSMg01no298_n02.g1)
ACCAG425761AG425762
length743758
length of high quality
(start - end)
284 (131 - 414)250 (68 - 317)
definitionCHROMAT_FILE: MSMg01no298_n02.b1 PHD_FILE: MSMg01no298_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:34 2005CHROMAT_FILE: MSMg01no298_n02.g1 PHD_FILE: MSMg01no298_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAAAATCCGCGG
AATTCTCCTAAGTTATACACCAAGGGTCAAATTCTATCTGCCACATAAAT
ATGCACACACACACACACACTTTTCCTCTACACACACACACACTGGCACA
CACAAAGTCATGTACACACACACCAGTATGTGCACACACTCAGATATATT
CATATATACACACAGTAGCATATGCAACCACAAACATGTATATGTACATG
CACATGTACCCACACACTTGGGCACGTGCACATACACACACACACACTAC
ACATACACAAATATCACATATCACCATATATACCCTTTAAGTTTATACTT
CAGCAGCTTTTAGTAAATTCTGTTTTGTACAAACATCACCATTAATTTCA
GAATACTTACATCACTCCTAAGGGAAGTAGCCTACTTTACAATAAGTCAC
TCCATCTTTTCCTCCTCCGATCCCCCTACCAATCTCTTATCTGCATATTC
CATGATGGTTCTATGGACTGGTCTATTCTAGTCCCGTGATACAATCATTG
TATGGGCCTTCTGCACCTGTTATCATTTTCTCAACTGTATGCTCCCACTT
CCATCCATACTGTGACCCTATATCGCTAATTCCTCCTTTACATACCCGAC
AAATTCCATTGTGGGTTCATACCACACCTTGCCTTGCCCCCTTTTCTGCA
TTGAACATTACCAGTTCCCCCCCTTCCGCCCCTAAATTTGCCT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTGCGAAATTCTTGGCCCTTCTGCAATGCTCAGTTGTTCCAG
AGGCCTGTAGACAATGCCTGACCATTCCATGCTTCAGTCCTATCTCCCTA
ACATGGTCCAATAGCCCTGAAAGGAGGGGGATAATTTGAGAATAAAGTCC
TCAGGTTTTTTTTGGGGGGAGGGGGGACAAGATCTAGATCTCCACTCTGC
CCTATGTATGCGGGATCTGGAATTTAGGGATGGTGTTTCTCTCTCTTTCT
TAGGATACTAAGGTGTCTTGTTTTTATCCATGGAGGCTTTAGGACAGGGG
AGAGCTGGTCTCTTGCTACTGGACAGGACACTGGATGGCATAAAACGATG
CATCCCCAAGTCCGTGTGAGCCCAGAGAGTCGAATTGTATACAGCCCCAC
TTTGCATCAGTGACACCACAGTAAACAATGAAACGTTACTCGCCTGCGGT
TGCACAAGTTTTCCATCCAGTCTTTGGTCTAGTTAGGAATATGCTTCTGT
GTTGAGAGTCTCCCTCTTATGATACACAATGGCACGGGGTTCACGCCTCT
CCTTCCCCTTAATGACATCTCTCCTTTGATTCTTATGCTTATGTGCACCC
TATTACCTTGCCCAACCCTTGCGTCTTGTCCGCTTGTATCTGACTCCTTT
GGTAATATTGCCCTCCTCCCAATCCCCCGTTCCTTTTCTACACCCTCCCT
GGGGTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_n02.g1 MSMg01no298_n02.g1 CHROMAT_FILE:
MSMg01no298_n02.g1 PHD_FILE: MSMg01no298_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:35 2005
         (250 letters)



>mm_chr1_180863271_180863914
          Length = 644

 Score =  406 bits (210), Expect = e-118
 Identities = 237/248 (95%), Gaps = 6/248 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttggcccttctgcaatgctcagttgttccagaggcctgtagacaatgcctgaccattc 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcttggccctcctgcaatgctcagttgttccagaggcctgtagacaatgcctgaccattc 383

                                                                       
Query: 61  catgcttcagtcctatctccctaacatggtccaatagccctgaaaggagggggataattt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 382 catgcttcagtcctatctccctaacatggtccaatagccctgaaaggaggaggataattt 323

                                                                       
Query: 121 gagaataaagtcctcaggttttttttggggggaggggggacaagatctagatctccactc 180
           ||||||||||||||||||   ||||||||||  |||||| ||||||||||||||||||||
Sbjct: 322 gagaataaagtcctcagg---tttttggggg--gggggg-caagatctagatctccactc 269

                                                                       
Query: 181 tgccctatgtatgcgggatctggaatttagggatggtgtttctctctctttcttaggata 240
           ||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 268 tgccctatgtatgtggggtctggaatttagggatggggtttctctctctttcttaggata 209

                   
Query: 241 ctaaggtg 248
           ||||||||
Sbjct: 208 ctaaggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 644
Length adjustment: 9
Effective length of query: 241
Effective length of database: 635
Effective search space:   153035
Effective search space used:   153035
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)