BAC Information

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BAC

Clone NameMSMg01-299B06
Chromosome1 (Build37)
Map Location 162,918,893 - 162,919,159
singlet/doubletsinglet
Overlap geneSerpinc1
Upstream gene4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l, Gpr52, EG620750, Rc3h1
Downstream geneZbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299B06.T7 (MSMg01no299_b06.b1)MSMg01-299B06.TJ (MSMg01no299_b06.g1)
ACCAG425952AG425953
length753742
length of high quality
(start - end)		275 (41 - 315)527 (70 - 596)
definitionCHROMAT_FILE: MSMg01no299_b06.b1 PHD_FILE: MSMg01no299_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:54 2005CHROMAT_FILE: MSMg01no299_b06.g1 PHD_FILE: MSMg01no299_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTGAATCTGGCATCTGACTCAACCAGGAGGGGGAGGGGAAGGAGCTGGG
TGACTTCTAGGTTTCTGGACTGGTGTCAGGATCCACTGGGTTGAAGGATA
GAAGAGCAGGTGTGTGGGGGAGGTGACAGCTCAGCATGTCACATCTCACT
ATGGAAGTCGCTGGCCTTCCAGACCGAACTGTNNCCGGCCAATGGTAAGT
CTGGCTGTCTGTGTGCAGACTGGAGCTGCAGATCTGGGGCCTTCTGTACT
CAGCTGATCCTTCNGTNTNGNNNNNNNNNNNNNNNNNNNNNNNNNNTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTNNTNNTTNTNTTTNNTTTTCTTT
TTTTTTTTNTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTT
TTTTTTTNTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTCTCTTTTCC
CCCTTTCCCCTTTTTCTCTCTTTTCTTCTTCCCCCTCTTTCCTCTCTTTC
CTCTCCCTCCCCCTTTTTCTTTTCTNCCTTTTCTTTCTTCTCTCTTTCCN
CCCTCCTTCCCCTTCCCCTTTCTCCCCTTTCTTTCCCCCTCNCCCNTTTT
CTTTTTTCTCTTCTCTTCTTCTTCTTCTTCTCCCCTTTCCCCTCTCTCTT
TCT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTAGCCTCAAACTCAA
GAGTTCTGCCAGCCTCTGCCTCCCACGTGTTGGGATTAAAGGAGTACACC
ACTATGTCTGGAATATATACCTAATTTTTAATCTACGAAGGTGTTTGTGT
GTGCTCATGTGCACACATGTGTGCTTGTGAAAGCCAGAGGAAAACCTTGA
AGGTGATTCCTGGGGCACTGGCCACCTTTTATTGGAATCAGGGTCTCTCA
CTGTCCTGGAACTCACCAAGTACAACAGTCTGGGTGGCTCTGGGTGGCCA
GAAAGCCCCAAGGATCTGCGTGACTGCGCCTGCTTGTGCTAGAATCGCAG
TGTGTGGCCACACCCAGCTTCCACCTCGGTCCTGAGGACTGAACTCAGGT
GGTTGTGCTCACAGGACAAGTACTTTACTAACTGTGATGGTTGGTTTTAA
GTCAGCCTGACCCAACCTAGAATCACATGGGAAAGGAGCCTCAATGAGGG
TTGTCTAGGTTAGATTGGCCTCTGAGCATGCTTTCTTTTGGGGTTGGAAG
TGTTTGCTCTTTGGTTCGCTTATTCCTCTCCCTCTTTCCCCCACGTTCTT
CCTCCACGTTTCCCTTTTTTTTTCTCTTCTCCTCCGTCTTTTTACCTTTA
TTCCCTTCTTTCCCCCCCCTTTCTTTTTTTATCCTCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_b06.b1 MSMg01no299_b06.b1 CHROMAT_FILE:
MSMg01no299_b06.b1 PHD_FILE: MSMg01no299_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:54 2005
         (275 letters)



>mm_chr1_162918689_162919361
          Length = 673

 Score =  470 bits (243), Expect = e-137
 Identities = 262/269 (97%), Gaps = 2/269 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgaatctggcatctgactcaaccaggagggggaggggaaggagctgggtgac 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgaatctgggatctgactcaaccaggagggggaggggaaggagctgggtgac 264

                                                                       
Query: 65  ttctaggtttctggactggtgtcaggatccactgggttgaaggatagaagagcaggtgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctaggtttctggactggtgtcaggatccactgggttgaaggatagaagagcaggtgtg 324

                                                                       
Query: 125 tgggggaggtgacagctcagcatgtcacatctcactatggaagtcgctggccttccagac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgggggaggtgacagctcagcatgtcacatctcactatggaagtcgctggccttccagac 384

                                                                       
Query: 185 cgaactgtnnccggccaatggtaagtctggctgtctgtgtgcagactggagctgcagatc 244
           ||||||||  ||||||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct: 385 cgaactgt--ccggccaatagtaagtctggctgtctgcgtgcaggctggagctgcagatc 442

                                        
Query: 245 tggggccttctgtactcagctgatccttc 273
           |||||||||||||||||||||| ||||||
Sbjct: 443 tggggccttctgtactcagctgctccttc 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 673
Length adjustment: 9
Effective length of query: 266
Effective length of database: 664
Effective search space:   176624
Effective search space used:   176624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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