Query= MSMg01no299_e06.b1 MSMg01no299_e06.b1 CHROMAT_FILE:
MSMg01no299_e06.b1 PHD_FILE: MSMg01no299_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:09 2005
(492 letters)
>mm_chr1_20153438_20154328
Length = 891
Score = 803 bits (415), Expect = 0.0
Identities = 457/473 (96%), Gaps = 7/473 (1%)
Strand = Plus / Plus
Query: 5 gtacagacacttgttgttaaccccagtgaactgatttttattcccaaaaatccaaatggt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gtacagacacttgttgttaaccccagtgaactgatttttattcccaaaaatccaaatggt 264
Query: 65 gaaggagagaaccaagtctggcaaaattgtcctctgacaaccaaatattattgtacatat 124
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaggagagaaccaagtctggcaaatttgtcctctgacaaccaaatattattgtacatat 324
Query: 125 tgcgaactgtggtacacatgtgcaatttgtgtgtgtgtgtgtcgggggggtaatcaatag 184
||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 325 tgcaaactgtggtacacatgtgcaatatgtgtgtgtgtgtgt---gggggtaatcaatag 381
Query: 185 tatatagaggttaaattatcacattttctctgagacataaaattaaaagatatcttgtgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tatatagaggttaaattatcacattttctctgagacataaaattaaaagatatcttgtgt 441
Query: 245 a--tgtgtatacta-ggataacttttcccttgccttattgagtttttctagaatttgtac 301
| ||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 442 atgtgtgtgtac-agggataacatttcccttgccttattgagtttttctagaatttgtac 500
Query: 302 tagtaattaaaaaatggaaacaaatagccctctgctctcatagcacaaaactttgagaaa 361
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 tagtaattaaaaaatggaaacaaatagccctctgctctcatagcaccaaactttgagaaa 560
Query: 362 gacaaatcacaataatgaaatataacatgttcttggattagtatatgcagccctcataca 421
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 gacaaatcacaataatgaaatatagcatgttcttggattagtatatgcagccctcataca 620
Query: 422 cattcacaggaaaaactataaaaacaaattattaggggatatatggcttagca 474
|||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattcataggaaatactataaaaacaaattattaggggatatatggcttagca 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 891
Length adjustment: 10
Effective length of query: 482
Effective length of database: 881
Effective search space: 424642
Effective search space used: 424642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_e06.g1 MSMg01no299_e06.g1 CHROMAT_FILE:
MSMg01no299_e06.g1 PHD_FILE: MSMg01no299_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:09 2005
(523 letters)
>mm_chr1_20190099_20191021
Length = 923
Score = 980 bits (507), Expect = 0.0
Identities = 519/523 (99%)
Strand = Plus / Minus
Query: 1 agtcattgtggccactagctcctcttttgactgcatccacgacagaaaggctcctcagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 agtcattgtggccactagctcctcttttgactgcatccacgacagaaaggctcctcagtc 664
Query: 61 agccaactggacatcaacagatagagcaccttccaatcccagaggaggccgaattggtat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 663 agccaactggacatcaacagatagagcaccttccaatcccagaggaggccgaatcggtat 604
Query: 121 tctgtggcctgtttctgcctcagaaccaaatgcatggccccaggagccatggcacaaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tctgtggcctgtttctgcctcagaaccaaatgcatggccccaggagccatggcacaaagt 544
Query: 181 aaggagccatcattcagtcccaggaattatgaagcttcaaggtaggattcttgactttgc 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aaggagccgtcattcagtcccaggaattatgaagcttcaaggtaggattcttgactttgc 484
Query: 241 cctaaatatatggatccattcacccaaacacacaatgttcagtagtattctgaaaccata 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cctaaatatatggatccatccacccaaacacacaatgttcagtagtattctgaaaccata 424
Query: 301 cagctagaaggtcctgtctggtctactgcttgcttgtctagctggcatcctactattcat 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 423 cagctagaaggtcctgtctggtctactgcttgcttgtctagctgggatcctactattcat 364
Query: 361 gaattacaattgtgtattaaagacagtgagtgatttcttacagaagttactgtttctact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gaattacaattgtgtattaaagacagtgagtgatttcttacagaagttactgtttctact 304
Query: 421 tgctggactgtcttcattataactatttaactctataattactccttaatagcaattgct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgctggactgtcttcattataactatttaactctataattactccttaatagcaattgct 244
Query: 481 tttcctgctatccaatacagtaactgagatgcagaaattgtat 523
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tttcctgctatccaatacagtaactgagatgcagaaattgtat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
