BAC Information

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BAC

Clone NameMSMg01-299E10
Chromosome1 (Build37)
Map Location 28,236,950 - 28,237,199
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677427, LOC100040952, EG433281
Downstream geneEG665903, Gm597, LOC435614, EG623924
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299E10.T7 (MSMg01no299_e10.b1)MSMg01-299E10.TJ (MSMg01no299_e10.g1)
ACCAG426097AG426098
length775841
length of high quality
(start - end)
249 (73 - 321)229 (70 - 298)
definitionCHROMAT_FILE: MSMg01no299_e10.b1 PHD_FILE: MSMg01no299_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:09 2005CHROMAT_FILE: MSMg01no299_e10.g1 PHD_FILE: MSMg01no299_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAGATGCGCGGAAT
TCATTAAACTTTGCATGATTAAATGTACTTGGACTTAATTCATGGCCAAT
AGTTATATAAAAGTAAGGTACTGGGTATTCCTCGTGTTATAGAAAAAAAA
AGAAAGATTTTCAACATTTCAAGGTTCATAAATATGGACTCTGAAAGGTA
AGAATGAAACTGTAACATAATCAAAGAATTTTAGAATATATAATTTAGGA
AAATCAAATGAAATAGAATGTTGACTCAATACATTATGAAATCTCTAGAT
GGTTCTGAATATCAATAGTATATTTTTATAATAACATTATGAAATCTCAC
CCCTGAAAACCAAGTTATTCATGTTTGATAGCTGGTAGAAGAAGGAAGTT
TGTTGGTTTTAATGACCAACTCTTAATAGATTAACCACACTTTAAGGCAG
GTGCCACTCCCAAGAGCGGTTGGGTAACACCGATAGGATCTAACCATAAA
TAAAACAAAAAGAAACCCCAAACCCTATACCAAAAACTAAAACTAAAAGA
CCTAAAAATTAAACTAAAATAAGACAACAATCCCGGACGGGTGGTTATAT
CCGAAAACAGTTGGGGACCTGTGATTACATCCTCACAATATGCTATATTT
ATAACTCCCATACTCCCTAAAATATTATGACAAAATTTCTTGAATGCTAT
GGACACCTGAACTATTTTATTCAAACAACACCTTCACCCCTAACTGTCTT
TATCGCCACTTTCCAACAATGTGTN
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTCCTAGTCACTCCCATTCTCGGGGTGTAA
TAGTGGGGTGATGGGCAAGCAACGAACCAGGAGCTGTCACGCCATATCAG
GTGCTGAAACGTCACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGT
TTGGGGTCTTCCTGAGAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTC
TGGTTTGTTGCATCTTTCTTGCCGGTCGAGCGGGACGCAATAAGTGGCAC
CGAACAACCCGGGAACTGTTTTCACACCGGTGCAAGGAAGATCCCTCGCT
CGCGCCGTATTTTTTTAATCGTGCCACAGAAGGCTCCACCAGGTACGTAC
AATCTTGACACCCCCCCCAGAGTTATAAAACCTTAAGACCGTTTGCCCGG
CGATTACCCTTTCTCCTCCCCGCGCTCCTTTCGCTTTCCCCCCCTGCCAA
CCTGCTGAATTGGTTTCTTTAACCCCCGCTCTCTGCCTTGCCACAGACTC
CCTGTTACCGTGTACCCTTATTTCCAGTTGTCCCCTCTAACCCCTAAAAC
CCCCTCTCTCCATTGCGGAATTCCCCCCCATCCCACCTCAACACACACCC
TCTTACCTTTAAGTTCTTGTCGTTCCTCCTTCTTCTTCTAGATTTGTCGC
CATCATATCCTCCTTACCCTCATCCTCCTCCAAAAAACAAAACTCTTGCA
TTCCCACCTTCTCTTTTCCCCTCCTCCCCTCCCCCCCCTCTCCCACCGCC
CCCTCTCCTCCTCTTTCTCCTTCTCCTGCTCCTTCTCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_e10.b1 MSMg01no299_e10.b1 CHROMAT_FILE:
MSMg01no299_e10.b1 PHD_FILE: MSMg01no299_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:09 2005
         (249 letters)



>mm_chr1_28236750_28237399
          Length = 650

 Score =  468 bits (242), Expect = e-136
 Identities = 248/250 (99%), Gaps = 1/250 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtacttggacttaattcatggccaatagttatataaaagtaaggtactgggtattcct 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 450 atgtacttggacttaattcatggtcaatagttatataaaagtaaggtactgggtattcct 391

                                                                       
Query: 61  cgtgttatag-aaaaaaaaagaaagattttcaacatttcaaggttcataaatatggactc 119
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cgtgttatagaaaaaaaaaagaaagattttcaacatttcaaggttcataaatatggactc 331

                                                                       
Query: 120 tgaaaggtaagaatgaaactgtaacataatcaaagaattttagaatatataatttaggaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgaaaggtaagaatgaaactgtaacataatcaaagaattttagaatatataatttaggaa 271

                                                                       
Query: 180 aatcaaatgaaatagaatgttgactcaatacattatgaaatctctagatggttctgaata 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aatcaaatgaaatagaatgttgactcaatacattatgaaatctctagatggttctgaata 211

                     
Query: 240 tcaatagtat 249
           ||||||||||
Sbjct: 210 tcaatagtat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space:   153840
Effective search space used:   153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)