Query= MSMg01no299_n14.b1 MSMg01no299_n14.b1 CHROMAT_FILE:
MSMg01no299_n14.b1 PHD_FILE: MSMg01no299_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:53 2005
(523 letters)
>mm_chr1_94185060_94185982
Length = 923
Score = 917 bits (474), Expect = 0.0
Identities = 507/518 (97%), Gaps = 2/518 (0%)
Strand = Plus / Plus
Query: 5 gaattcctcatatctatccgaagcccccattcatagttagctgctctgtgctgcacacga 64
|||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattcctcatatcgatttgaagcccccattcatagttagctgttctgtgctgcacacga 264
Query: 65 tcgacggcctctcttaccattgtactctgcgttctcagccagtgtctaattgttttgatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcgacggcctctcttaccattgtactctgcgttctcagccagtgtctaattgttttgatt 324
Query: 125 aatattgctgtacactttgatttatgcgcagtagtgaattccctatgatttcctgtgttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatattgctgtacactttgatttatgcgcagtagtgaattccctatgatttcctgtgttt 384
Query: 185 tcttggcaacctctccgtatttatgattctgccagcgtcagaaccagctttccaagtgga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcttggcaacctctccgtatttatgattctgccagcgtcagaaccagctttccaagtgga 444
Query: 245 accctctcgctctctttgagctggctgggtgtagtgtacaatctggtggggatttcatgt 304
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 445 accctctcgctctctttgagctggctgagtgtagtgtacagtctggtggggatttcatgt 504
Query: 305 ctttacctattcaactctcacatccagaaacaagatgtgtctctc-tttaaactgaccct 363
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 505 ctttacctattcaactctcacatccagaaacaagatgtgtctc-cgtttaaactgaccct 563
Query: 364 gtccccgtgtatcgcctgagagattgtcatgattttcttatatttagatgattcctgact 423
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 564 gtccccatgtatcgcctgagagattttcatgattttcttatatttagatgattcctgact 623
Query: 424 ctcatgggttttttcccccaagttaagccaaacctcttctttctaacatcatgcagtgtt 483
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctcatgggtttttttccccaagttaagccaaacctcttctttctaacatcatgcagtgtt 683
Query: 484 tgtggagaacattccccctgtatgtgctggatgcctgg 521
||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgtggagaacattccccctgtatgtgctggatgcctgg 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_n14.g1 MSMg01no299_n14.g1 CHROMAT_FILE:
MSMg01no299_n14.g1 PHD_FILE: MSMg01no299_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:53 2005
(299 letters)
>mm_chr1_94351756_94352454
Length = 699
Score = 571 bits (295), Expect = e-167
Identities = 298/299 (99%)
Strand = Plus / Minus
Query: 1 ttccgtagtttcagggagctatgagtccaggaagtgtgtggcagaggagtcctgcatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ttccgtagtttcagggagctatgagtccaggaagtgtgtggcagaggagtcctgcatgaa 628
Query: 61 ggccagccctaagaggacaggaagccatataagattgctgcatgaagatgagaaaatgaa 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ggacagccctaagaggacaggaagccatataagattgctgcatgaagatgagaaaatgaa 568
Query: 121 gggtggtttgcagtggaaagcccagatggtggagatgctgtgagatgtctgtcaggaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gggtggtttgcagtggaaagcccagatggtggagatgctgtgagatgtctgtcaggaagt 508
Query: 181 ggagctgctgcagcactctgagcctgtctgtgcctgtcttgccctgctctgtcatgtgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggagctgctgcagcactctgagcctgtctgtgcctgtcttgccctgctctgtcatgtgct 448
Query: 241 tgggatagagtctgaggctgttgggcccctccatttatgctaaccctcacttctcccca 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgggatagagtctgaggctgttgggcccctccatttatgctaaccctcacttctcccca 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space: 200100
Effective search space used: 200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
