BAC Information

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BAC

Clone NameMSMg01-299N21
Chromosome1 (Build37)
Map Location 10,889,625 - 11,085,068
singlet/doubletdoublet
Overlap genenone
Upstream geneSgk3, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1, Cpa6, LOC433271
Downstream geneC030045D06Rik, A830018L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299N21.T7 (MSMg01no299_n21.b1)MSMg01-299N21.TJ (MSMg01no299_n21.g1)
ACCAG426521AG426522
length728734
length of high quality
(start - end)
319 (48 - 366)291 (80 - 370)
definitionCHROMAT_FILE: MSMg01no299_n21.b1 PHD_FILE: MSMg01no299_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:54 2005CHROMAT_FILE: MSMg01no299_n21.g1 PHD_FILE: MSMg01no299_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,889,625 - 10,889,939)(11,084,778 - 11,085,068)
sequence
GAGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTTCTGTGATTTCTAAAGACTGTGTGTATTTCCTGCCAGAACT
CCATATGACAGATGAGAAACACAACCAAACATCTACATGTTCACAAATAA
AATCAGTATGCTTGGTCTCTGACTGAACATCTAGCTAGCTGACTGCTGGA
ATTCCTAAGTTTCATCAACTATTTGGCATCATCTACAAACAAGATTAGTA
TTAAGGATTGAATCCGGGCACAGGTATCTCTTCTTGGTGAAGCAAAAGAG
AGAGACTTAATGTAGCAGTAGAAAAGATGTTTTATTAATGCTTCATAGCC
AGAGGAGCAGATTCCATATTTCCCCAGATACCCATTTAAAAGAAATCGTA
GTTGTTTGACGAAGGTTGAGGCTACCAGAGTGTTGATAATGGCTACTGAT
GTTGTCCTCATTTGGGTCTTATTTAGACAACATGGTGACATAGTGGGTAT
AATTTTTCTGACATTTGTAGAAGATACACTCTCATTAAAGAATGCTGAGA
GCAGAAGAAAGTCTTCCCCAGAGAAGATTACCTATCCCCACACTCCAGTT
GGTCACTAAGTGGTCAGCACTAAAATAATAAAGAACGTGTGTGTGTGTGT
GTGTGTGTGTGTATGTGTGTGTGTGTGTAAAGAAAAAGAGGNGCTGAACC
TGATAGAGGGAAGAGGCTGATAACCTGG
ATTGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCTTCCTGTAGCCAAATTA
ACTCAAATAAGATTATTACAGTCTTAGATGTCTAAATAGAGTCTGGGATG
TCATGCTAAAAGGTTTGAAGAAAATAGAGCCTATTCAACTTTAGTTAGAG
CTTTAGTTAGAGTTAGAGTCAGGAAGTTCAGTTGCTCCAAAATCATTTTC
AAGTTTCACACTGTTTCTATTGGTTATCTGACCTACACCATTTCTGTAAA
GTTAACTTTTATTTGAAAAGTCCACAGCTGTCATAGTTAAAGTTACTATT
GGTATGATGAAACATCACAGTTTATACCAAGTTGGGAAAGAAAGCGTTTA
TTCAGCTTACACTTCCATATGGCAGTTGATCATTAAAGGAAGTCAAACAG
GACAGAAAGCTGATGCAGAGGTTAGGGAGGAGTGCTTCTTATTGGCTTGC
TTCATCTGACTTTCTCAGCCTGCAGGACCTAGGATGACCAGCCCAGAGAT
GGTCCCAACTACAATAGTCTGGGTCCCTCCCATCAGCATTAATTTTAAAA
ATGCCCTATAGGCTTGCCTACAGCTATTTTCTCAATTGAAGTTCCTTCCT
CTTAGATAACTATAGTTGTGTCAACCTTGATGTCAACCTAGCCAGCACAA
TGGCTTGGACTCATATACCTTAAGTTGTTGGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_n21.b1 MSMg01no299_n21.b1 CHROMAT_FILE:
MSMg01no299_n21.b1 PHD_FILE: MSMg01no299_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:54 2005
         (319 letters)



>mm_chr1_10889421_10890139
          Length = 719

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttctgtgatttctaaagactgtgtgtatttcctgccagaactccatatgacag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttctgtgatttctaaagactgtgtgtatttcctgccagaactccatatgacag 264

                                                                       
Query: 65  atgagaaacacaaccaaacatctacatgttcacaaataaaatcagtatgcttggtctctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgagaaacacaaccaaacatctacatgttcacaaataaaatcagtatgcttggtctctg 324

                                                                       
Query: 125 actgaacatctagctagctgactgctggaattcctaagtttcatcaactatttggcatca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actgaacatctagctagctgactgctggaattcctaagtttcatcaactatttggcatca 384

                                                                       
Query: 185 tctacaaacaagattagtattaaggattgaatccgggcacaggtatctcttcttggtgaa 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 tctacaaacaagattagtattaaggattgaatccgggcacaggtatctctccttggtgaa 444

                                                                       
Query: 245 gcaaaagagagagacttaatgtagcagtagaaaagatgttttattaatgcttcatagcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcaaaagagagagacttaatgtagcagtagaaaagatgttttattaatgcttcatagcca 504

                          
Query: 305 gaggagcagattcca 319
           |||||||||||||||
Sbjct: 505 gaggagcagattcca 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no299_n21.g1 MSMg01no299_n21.g1 CHROMAT_FILE:
MSMg01no299_n21.g1 PHD_FILE: MSMg01no299_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:54 2005
         (291 letters)



>mm_chr1_11084620_11085310
          Length = 691

 Score =  563 bits (291), Expect = e-165
 Identities = 291/291 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taccttcctgtagccaaattaactcaaataagattattacagtcttagatgtctaaatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 taccttcctgtagccaaattaactcaaataagattattacagtcttagatgtctaaatag 390

                                                                       
Query: 61  agtctgggatgtcatgctaaaaggtttgaagaaaatagagcctattcaactttagttaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agtctgggatgtcatgctaaaaggtttgaagaaaatagagcctattcaactttagttaga 330

                                                                       
Query: 121 gctttagttagagttagagtcaggaagttcagttgctccaaaatcattttcaagtttcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gctttagttagagttagagtcaggaagttcagttgctccaaaatcattttcaagtttcac 270

                                                                       
Query: 181 actgtttctattggttatctgacctacaccatttctgtaaagttaacttttatttgaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 actgtttctattggttatctgacctacaccatttctgtaaagttaacttttatttgaaaa 210

                                                              
Query: 241 gtccacagctgtcatagttaaagttactattggtatgatgaaacatcacag 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gtccacagctgtcatagttaaagttactattggtatgatgaaacatcacag 159


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)