BAC Information

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BAC

Clone NameMSMg01-300C07
Chromosome1 (Build37)
Map Location 128,449,364 - 128,449,854
singlet/doubletsinglet
Overlap geneE030049G20Rik
Upstream geneSlc35f5, Lypd1
Downstream geneLOC383559, Mgat5, LOC667090, Tmem163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300C07.T7 (MSMg01no300_c07.b1)MSMg01-300C07.TJ (MSMg01no300_c07.g1)
ACCAG426712AG426713
length735840
length of high quality
(start - end)
489 (74 - 562)118 (78 - 195)
definitionCHROMAT_FILE: MSMg01no300_c07.b1 PHD_FILE: MSMg01no300_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:14 2005CHROMAT_FILE: MSMg01no300_c07.g1 PHD_FILE: MSMg01no300_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATGCTTACCTTCATCTTCATCATCTCTCTCTTCCCTCCTGCT
CCTTCCTCAATGCAAAGTAAAGGCGGCATACATTATTAAAAACTGAAGCC
GCCAGAAGAAAGAACCTTCTAGAAGTAATGAGAAGTTTATGGAACTTTTC
TTCTTTTGTTCTATATAAAGACCACAAGGCTCTAGTCACTGGGGCAGGGG
TTATAAAGCATGGGCTGAAGATGTGGGCTTCTGGACGGTTTTTAGTGACA
TATATAAACAGTGGGTTGCTTGGCCTTCACAAGCCTTGACTGTAGGATAA
GGAGGGGAAAGTCCATCACGTAACATATGAGACTCGTCCTGCTGTGGAGG
GGAGATAATTGAACCACTACACTGTACTGCTAGAAACAGAGATGGAGTAG
CCATATTTTAACCAAACATCCTAATACACTCAATGGCAGCCATTAATTTA
TTTCTGCCAAGACAAATGGCCTTATCCTTGAGACCATGGCGAGAAATAAT
TGGAAAAAGTTGGAGCCGGAGTGAAAGAGATAGGCTGTCTTTTGACACGG
TGATTCTTCCGTTTGCAATTAGCAACTGATAAAGCGCTGTGCATGTTTAT
TTTGAACAGCTCTGCTTATTCTTTACAACATTAAACCCGATGTCTTTTCT
TGCCGACCTTTCCCGATTACCTTCTCTCTTTACCN
TCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGGAAGCTCTCTCTCTTCC
AGCTAGATCAAGCTCCTAGTTCATCACCAGTTATATTGAAATCCAAGGGT
TCATCCACTCTCCTGATGTGGGTGAGGTGGGGTGGGGTGGAGTGTACACA
CCCTTTCTCATACCACATCCCTCCATCACATTCACTTTAATCCTTCTTCC
CTCTTTTTTTTAATAATAATCTTCCTTCCCTCCTTTACTTTTTCCCCCTT
CTGTCACCAACCTACCTCCTTATATTCTTTTTTCCTCATACTCTTTTTCC
CATCAAACCCCACAAACTTTTAATCATTTCCCCCCCCCCCCCCCCATTTT
TACGATTTTTTTTTCCAATCATCCTATCCCACCCCCCCCCTTAAAAAAAA
AATAATAACTCCCCTGGTGCGTGTGCTGCCTTTTTTCTAATACTCCCTCC
TATTTTTCTTATTCTCCTCCTCCCCCCAAATCTCATTTTACTTTCCACTC
TTTCCATTATCAAACAACTTATTACTATACTTTTTATTTCCCACTAATTC
TTCTCCTATATTTCCTTTTCCATTCTCAAATCCTATACCCCTCTATCCCA
CATCCAAAATCTCCTACTCCCTACTCCAATACACCAATATCTTTCACTTC
TTCCTTTCCTCTTATATTTTTTTCTTCCTACTCCTCTATATCTTTATCTT
CCCCCATTTCATCCCTCCTTCCTTTTAAACTAATATATCCTCCCACACAA
ATATTCTCCCATCCTCGATCCTACTATTACACATCTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_c07.b1 MSMg01no300_c07.b1 CHROMAT_FILE:
MSMg01no300_c07.b1 PHD_FILE: MSMg01no300_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:14 2005
         (489 letters)



>mm_chr1_128449167_128450054
          Length = 888

 Score =  884 bits (457), Expect = 0.0
 Identities = 482/491 (98%), Gaps = 2/491 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatcatctctctct--tccctcctgctccttcctcaatgcaaagtaaaggcggcatac 58
           ||||||||||||||||  |||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 198 ttcatcatctctctctcttccctcctgctccttcctcagtgcaaagtaaaggtggcatac 257

                                                                       
Query: 59  attattaaaaactgaagccgccagaagaaagaaccttctagaagtaatgagaagtttatg 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 attattaaaaactgaagccgccagaagaaagaaccttctagaagtaatgagaagtttatg 317

                                                                       
Query: 119 gaacttttcttcttttgttctatataaagaccacaaggctctagtcactggggcaggggt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gaacttttcttcttttgttctatataaagaccacaaggctctagtcactggggcaggggt 377

                                                                       
Query: 179 tataaagcatgggctgaagatgtgggcttctggacggtttttagtgacatatataaacag 238
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 378 tataaagcatgggctgaagacgcgggcttctggacggtttttagtgacatatataaacag 437

                                                                       
Query: 239 tgggttgcttggccttcacaagccttgactgtaggataaggaggggaaagtccatcacgt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgggttgcttggccttcacaagccttgactgtaggataaggaggggaaagtccatcacgt 497

                                                                       
Query: 299 aacatatgagactcgtcctgctgtggaggggagataattgaaccactacactgtactgct 358
           ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 498 aacatatgagactcgtcctgctgtggaggggagataattgaaccagtagactgtactgct 557

                                                                       
Query: 359 agaaacagagatggagtagccatattttaaccaaacatcctaatacactcaatggcagcc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agaaacagagatggagtagccatattttaaccaaacatcctaatacactcaatggcagcc 617

                                                                       
Query: 419 attaatttatttctgccaagacaaatggccttatccttgagaccatggcgagaaataatt 478
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 618 attaatttatttctgccaagacaaatggccttatccttgagaccatggggagaaataatt 677

                      
Query: 479 ggaaaaagttg 489
           |||||||||||
Sbjct: 678 ggaaaaagttg 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 888
Length adjustment: 10
Effective length of query: 479
Effective length of database: 878
Effective search space:   420562
Effective search space used:   420562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)