BAC Information

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BAC

Clone NameMSMg01-300G02
Chromosome1 (Build37)
Map Location 176,852,537 - 176,853,086
singlet/doubletsinglet
Overlap genenone
Upstream geneIfi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2
Downstream geneRgs7, Fh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300G02.T7 (MSMg01no300_g02.b1)MSMg01-300G02.TJ (MSMg01no300_g02.g1)
ACCAG426883AG426884
length732736
length of high quality
(start - end)
550 (69 - 618)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no300_g02.b1 PHD_FILE: MSMg01no300_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:31 2005CHROMAT_FILE: MSMg01no300_g02.g1 PHD_FILE: MSMg01no300_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCAGCGCATATCTCCAACGTTTAGATTTATTTTCTTTTCCACATATC
CTTATATTTTCCCGATATTTTCAACACAGAGATTTCCAATACGAATCAGG
TTATTCAGCATCCAGAGAATATAGACCAATGTTCGCACACTTGGTCTGGA
CAGGATAGATCACTTCACTGTGATGTTCGCTGGATGCTGGCTTTTTCTCT
GGGGGATTTTTGGTTTCCATTGGCCTCTTCAGCACTGAACCTCCATGAGT
CTCAACTGACAAAGGCACCTGAGTGTAAACTCATCATCTGTATACATGCA
CAGAGGTAAATCTTTGATCCCATCAATGAAGAAATGGCCTAAGAAAATCC
TGAGACCTTAGTTACTGAGCTGGGAAATTTCAAAGAAAATAAGATTTCAC
CTTATTTTTTTAAAAAACAGCCTACTATGGTCTTTCCTCAGTATATTTTA
TTGGTTTTCTTGGCAAAAGCTGTTGCTTCTGAAACCACAGAACTCCATTT
TGATTTTTGCCTTGATGGCTTCTTTCCCAGAATTATCCTATTTTGCATGC
CTTATTAAAACCCGACACTCTGGTTTCAGCCAACTCACAGCGCACCTAAG
TTCATAATCATAGAGAACAATATATATATATATATTTTACAACTTGCTGC
TAACAAACATCTTGCCTGCTTTCTTTTCATAT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGCTCACCATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGA
TCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCC
AGCAATACCTCTTTTGTGTATATATCCCGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGAAGACTTATTTATAATAGCCGGA
AGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGGAACTCACACAATATGCACTCACTGATAAG
TGGATATTAGCCCAAAACCTAAGATACTCAAGATATAAGATACAATTTCC
TAAACACATGAAACTCACGAAAAATGAAGACTGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_g02.b1 MSMg01no300_g02.b1 CHROMAT_FILE:
MSMg01no300_g02.b1 PHD_FILE: MSMg01no300_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:31 2005
         (550 letters)



>mm_chr1_176852337_176853286
          Length = 950

 Score = 1040 bits (538), Expect = 0.0
 Identities = 547/550 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacgtttagatttattttcttttccacatatccttatattttcccgatattttcaacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 aacgtttagatttattttcttttccacatatccttatattttcccgatattttgaacaca 260

                                                                       
Query: 61  gagatttccaatacgaatcaggttattcagcatccagagaatatagaccaatgttcgcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagatttccaatacgaatcaggttattcagcatccagagaatatagaccaatgttcgcac 320

                                                                       
Query: 121 acttggtctggacaggatagatcacttcactgtgatgttcgctggatgctggctttttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttggtctggacaggatagatcacttcactgtgatgttcgctggatgctggctttttct 380

                                                                       
Query: 181 ctgggggatttttggtttccattggcctcttcagcactgaacctccatgagtctcaactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgggggatttttggtttccattggcctcttcagcactgaacctccatgagtctcaactg 440

                                                                       
Query: 241 acaaaggcacctgagtgtaaactcatcatctgtatacatgcacagaggtaaatctttgat 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 acaaaggcacctgagtgtaaactcatcatctgtatacatgcacagaggtaaacctttgat 500

                                                                       
Query: 301 cccatcaatgaagaaatggcctaagaaaatcctgagaccttagttactgagctgggaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccatcaatgaagaaatggcctaagaaaatcctgagaccttagttactgagctgggaaat 560

                                                                       
Query: 361 ttcaaagaaaataagatttcaccttatttttttaaaaaacagcctactatggtctttcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcaaagaaaataagatttcaccttatttttttaaaaaacagcctactatggtctttcct 620

                                                                       
Query: 421 cagtatattttattggttttcttggcaaaagctgttgcttctgaaaccacagaactccat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagtatattttattggttttcttggcaaaagctgttgcttctgaaaccacagaactccat 680

                                                                       
Query: 481 tttgatttttgccttgatggcttctttcccagaattatcctattttgcatgccttattaa 540
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttgatttttgccttgatggtttctttcccagaattatcctattttgcatgccttattaa 740

                     
Query: 541 aacccgacac 550
           ||||||||||
Sbjct: 741 aacccgacac 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)