Query= MSMg01no300_g08.b1 MSMg01no300_g08.b1 CHROMAT_FILE:
MSMg01no300_g08.b1 PHD_FILE: MSMg01no300_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:32 2005
(314 letters)
>mm_chr1_101809289_101810002
Length = 714
Score = 563 bits (291), Expect = e-165
Identities = 303/307 (98%)
Strand = Plus / Plus
Query: 5 gaattcatctgaccataactctggcaacccaaaaatgtattaatagtttcaaattataaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatctgaccataactctggcaacccaaaaatgtattaatagtttcaaattataaa 264
Query: 65 agagaattcatagacctgtctctgtgatattaacatttgtagcattttattttctcatag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agagaattcatagacctgtctctgtgatattaacatttgtagcattttattttctcatag 324
Query: 125 ccatggccagaattacctcaagaatcacggttgtgatttggaagaagtagaacatgctga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccatggccagaattacctcaagaatcacggttgtgatttggaagaagtagaacatgctga 384
Query: 185 agcactttgccagatttttatttttagtcggttcctagaataatcattatctagagtcca 244
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 agcactttgccagatttttatttttagtctgttcctagaataatcattatctagagtcca 444
Query: 245 gaaatgtctcaaaaaagcactacattagagaattatcctgtcattccacagaggctatag 304
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 445 gaaatgtctcaaaaaagcactacattagagaagcagcctgtcattccacagaggctatag 504
Query: 305 gacatgg 311
|||||||
Sbjct: 505 gacatgg 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no300_g08.g1 MSMg01no300_g08.g1 CHROMAT_FILE:
MSMg01no300_g08.g1 PHD_FILE: MSMg01no300_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:32 2005
(284 letters)
>mm_chr1_101968796_101969481
Length = 686
Score = 478 bits (247), Expect = e-139
Identities = 275/285 (96%), Gaps = 2/285 (0%)
Strand = Plus / Minus
Query: 1 caaattcactacaaaagatgaagatataaataaattttacccactgttttttgtttgttt 60
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct: 562 caaattcactacaaaagaggaagatataaataaattctatccactgttttttgtttgttt 503
Query: 61 gtttgtttgtttgttttatctttttactgaaattcatatatcttacattaaagctggtga 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gtttgtttgtttgtttgatctttttactgaaattcatatatcttacattaaagctggtga 443
Query: 121 attgtggcttgactaaataaatgtaggaaacaaagttctgctttaaaggtctgtagcttt 180
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 442 attgtggcttaactaaataaatgtaggaaacaaagttctgcttttaaggtctgtagcttt 383
Query: 181 atgtgacatacatgaaac--atttatgcatatatatttaagtaactgaattttgactctc 238
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 382 atgtgacatacatgaaacatatttatgtatatatatttaagtaactgaattttgactctc 323
Query: 239 aaaaagtataaaattggaaataaatgccttttcagaagactttat 283
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaaaagtagaaaattggaaataaatgccttttcagaagactttat 278
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 686
Length adjustment: 9
Effective length of query: 275
Effective length of database: 677
Effective search space: 186175
Effective search space used: 186175
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
