BAC Information

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BAC

Clone NameMSMg01-300G16
Chromosome1 (Build37)
Map Location 145,444,267 - 145,444,578
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545369
Downstream geneCdc73, B3galt2, LOC623138, Glrx2, Trove2, Uchl5, Rgs2, Rgs13, Rbm6-ps2, Rgs1, EG639456, Rgs21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300G16.T7 (MSMg01no300_g16.b1)MSMg01-300G16.TJ (MSMg01no300_g16.g1)
ACCAG426910AG426911
length739787
length of high quality
(start - end)
317 (43 - 359)101 (125 - 225)
definitionCHROMAT_FILE: MSMg01no300_g16.b1 PHD_FILE: MSMg01no300_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:33 2005CHROMAT_FILE: MSMg01no300_g16.g1 PHD_FILE: MSMg01no300_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGAACTCTTTGGCTGTAAAAAAAAAAATCTAAGTAAAAATGGAAAG
ACTTGAGCAGACATGTTGACAAAAGGAATGTACGGATGGAAAATTTGTTC
CTAAAGATATGTTTCACAACAGTCATTTGTAGCTACTAAAACATCCAAAT
ATTTGTATTCAAGACCATACCAAAGGCTGGCAAGGAACTGGAAATACTTC
ACCTCTCAAGAACAACATTTAGAGAGGTGCAGTCACTTTGCTTTGCAGTT
TCACAGCTTGAAAAAAATACTTAAACACAGCGACTGTATCATCCCGCAAC
CACACATTATTTTTCTGCCTACCCCAGCACAGATTATAACCGCACATTCA
TATGCAGATGATTGCTCTATGAAATTTACTGCCCCCAGATACAAACAACT
CATATTTGTTATAATCAACTCACTAGGTATTTGAACAGACTGTGGCACAT
TCATACCATGAAGAGCTACTCAAAAAATTAAAAACATTGATATGAAATTG
GTGAGTTTCCAGATTATAAAAAGAACCTTCTAACAGACATAGAATCTAAC
TGACGCGGACTGTCATATAAGTTTCAAAATGAGAAAACTATAAAGAAGTC
AAGCAGATTAGCTGACTGGCAGAGTTAGGATGGAAGTATTAGTAGTAGAA
ACAACACAAAGAACTTCTGTGCTGATGTAGTATTTCCAN
TTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGACCAGCCAGGGCTACATAGTGAGA
CCCTGTCTCCAAAATTAACCCCCGGTTTAAAGAGGCAGAGGCAGGCGTTT
TTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCA
GAGCTATACAGAGAAACCCTGCCTCGAAAAACCACTATAAAAAACAAAAT
AACAAAAAGTCCCAACAGATAGAAATCTTATCTTCAAATTGCCACACTCC
ACAGCACAAAGAAAATTTTTTTTTTAATGTATTTGATTGACAACCAGACA
CCAGCCTGTTTACTACTTCCCCCCCCCCCCCCCGCTATTTCAGTATTGCT
TTGTTCTGTCGACCCTCCCACCCAAAAAAAAAAAAAAACCCGGCCGGCGG
TGGCCCCCCTTTTCTCTTCCCTCCCTTCCCCCCTTCCCCACTTTCCCCCC
CCTTTTTCCCCCTTTTCCTCTTTCTTTTCCCCCCTTTTCCCTTCCCTTCC
CTATACCCCCCTTCTCCCCCCTCTTTTTTCCCCCACTTTCTCTCCCTCCC
ATTTCCCTACTACACATCTCTTCCTATATTTTCCCCCTCCCCCCCTTTTT
TTTTTTTTTTTCCCTTCCCCCTTTTTTCCCCTCTTTTTTTTTCCCCCTCC
CCCTAAATCACTCTCCCTTCACTCCCCCCCTCCCCCTCTCCTCTACTATA
CCCCCTTTTTCTTTCCCCTTTCCCTCCCTCTTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_g16.b1 MSMg01no300_g16.b1 CHROMAT_FILE:
MSMg01no300_g16.b1 PHD_FILE: MSMg01no300_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:33 2005
         (317 letters)



>mm_chr1_145444064_145444780
          Length = 717

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%), Gaps = 1/312 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgaactctttggctgtaaaaaaaaaaa-tctaagtaaaaatggaaagacttg 63
           ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 204 gaattctctgaactctttggctgaaaaaaaaaaaaatctaagtaaaaatggaaagacttg 263

                                                                       
Query: 64  agcagacatgttgacaaaaggaatgtacggatggaaaatttgttcctaaagatatgtttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agcagacatgttgacaaaaggaatgtacggatggaaaatttgttcctaaagatatgtttc 323

                                                                       
Query: 124 acaacagtcatttgtagctactaaaacatccaaatatttgtattcaagaccataccaaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acaacagtcatttgtagctactaaaacatccaaatatttgtattcaagaccataccaaag 383

                                                                       
Query: 184 gctggcaaggaactggaaatacttcacctctcaagaacaacatttagagaggtgcagtca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctggcaaggaactggaaatacttcacctctcaagaacaacatttagagaggtgcagtca 443

                                                                       
Query: 244 ctttgctttgcagtttcacagcttgaaaaaaatacttaaacacagcgactgtatcatccc 303
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 444 ctttgctttgcagtttcacagcttgaaaaaaatacttaaacacagggactgtatcatccc 503

                       
Query: 304 gcaaccacacat 315
           ||||||||||||
Sbjct: 504 gcaaccacacat 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)