BAC Information

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BAC

Clone NameMSMg01-300I17
Chromosome1 (Build37)
Map Location 128,393,203 - 128,393,672
singlet/doubletsinglet
Overlap geneE030049G20Rik
Upstream geneSlc35f5, Lypd1
Downstream geneLOC383559, Mgat5, LOC667090, Tmem163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300I17.T7 (MSMg01no300_i17.b1)MSMg01-300I17.TJ (MSMg01no300_i17.g1)
ACCAG427004AG427005
length751753
length of high quality
(start - end)
74 (61 - 134)590 (70 - 659)
definitionCHROMAT_FILE: MSMg01no300_i17.b1 PHD_FILE: MSMg01no300_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:43 2005CHROMAT_FILE: MSMg01no300_i17.g1 PHD_FILE: MSMg01no300_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTA
CCTTACGCTCCCACAGGGGTCATTTCACATAATAATAATAATAATAATAA
TAATAATAATAATACTAATAATAATAATAATATTATGCGGCGTCCTATAA
TAATGGTGTACCATCTTCTGTTGTCCTCACGAAAGATTTTCTTCCCCTTC
TTGGCTTGTTGCTGTTCTCCCCTCACTACATAAAAGAGGAGGACCACCAT
AACTCCTCACGACAGATAAGATGGACGATTGTTGTAAGCAATCTGATGAG
ATGAGATGTTTTGTCCCTCCTCCAGGACTACTTTTTCAACCATGATGAAC
AACTGATGATTCTTCGGAGGATCATGATGTTTATTCTCCTCCTATAATTG
CCGCCTATTTCTTTTATATAAAATATATTATATGTTGAGAACATATTCTT
CTACATGATGCTTTTTTTAAAATATATATCCTTCTTCAGGAGGCCCTCGT
TGCTCTTCTTAATTCTTTAGTTCATGATGAGTCACTCTTCCATCTAATTA
TTCCTCGAAAACCGCCCATCTATCCTTCATCTACTGCTGCGCGGACTACT
GAAGGGAGTTTTTCAGCCGGCAGAAGACCGATGATGATACAGGAGGCGTC
AAGGAAGACTACTTATTCTTCTCCTCGAGGATTCTTCTGTCCGCCACTCA
TCCTGCTGATGATGAACACACAACTCCTGTTGTTGGACGATCAACACGAT
A
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTCACAGGAACAAAACTTAAACTCCTAAAT
GGACTACAGTGTTGTCCCAAAGCCAGTTACCCTGTTCTGATCTTATAGTC
ACATGAATATCAGTTTATAATTGTCTCTCTTAAATATAGAGTTCAATGGT
TATTTATACTTGATTAGTGGAAGAGTTAAATGTAGGGGTGGGAGATGATT
CCTGTGGGTACGAGCACTGGCTGCCCTTGCTGAGGATACAGGTTTGATTC
TCAGCATCCACACGGTGGCTCACAACTGTCTCCGAGTCCAGTTCCAGGGC
ATCCACGCCCTCTTCTGGCCACCTTAGGTACTGGACATGTGGGATATGCT
TTACCAGGAGCAGTGCTTTCAAAGCAGCATTCGAATCTTTAATTCTTTAA
GATTCCATGGNCATATGGCTCAAATCACATTTTCATTTTAGGATGATGCT
CACTGCCTGTTTTTACATTTATTGTCAGGAGGTTGTTCATTGTGAAGCAG
TCTTGATATTTTTCAAACCACGTTACGGCCTCAATTTTGTTGTCTTCTTT
TATTCCTTGCATATTGATTTCACTTAGTACAATTTATTTAACGAGATGTG
TTTGATCGATCCGGAATCAGTGTTGTATGTTCTCCCTTATTAGATTGAGA
TCTCTTTTTTTCCTGTCTTAAAGCGTACCTTTTACAAATCTTCCATGAGC
TTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_i17.g1 MSMg01no300_i17.g1 CHROMAT_FILE:
MSMg01no300_i17.g1 PHD_FILE: MSMg01no300_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:43 2005
         (590 letters)



>mm_chr1_128392683_128393672
          Length = 990

 Score =  797 bits (412), Expect = 0.0
 Identities = 456/471 (96%), Gaps = 2/471 (0%)
 Strand = Plus / Minus

                                                                       
Query: 121 agttcaatggttatttatacttgattagtggaagagttaaatgtaggggtgggagatgat 180
           ||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||
Sbjct: 990 agttcaatggttatttatacttgattagtgggagagttaagtgtacgggtgggagatgat 931

                                                                       
Query: 181 tcctgtgggtacgagcactggctgcccttgctgaggatacaggtttgattctcagcatcc 240
           |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 930 tcctgtgggtactagcactgactgcccttgctgaggatacaggtttgattctcagcatcc 871

                                                                       
Query: 241 acacggtggctcacaactgtctccgagtccagttccagggcatccacgccctcttctggc 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 870 acacggtggctcacaactgtctccgagtccagttccagggcatctacgccctcttctggc 811

                                                                       
Query: 301 caccttaggtactggacatgtgggatatgctttaccaggagcagtgctttcaaagcagca 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 810 caccttaggtactggacatgtgggatatgctttgccaggagcagtgctttcaacgcagca 751

                                                                       
Query: 361 ttcgaatctttaattctttaagattccatggncatatggctcaaatcacattttcatttt 420
           ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 750 ttcgaatctttaattctttaagattccgtggtcatatggctcaaatcacattttcatttt 691

                                                                       
Query: 421 agga-tgatgctcactgcctgtttttacatttattgtcaggaggttgttcattgtgaagc 479
           | || |||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 690 a-gagtgatgctcactgcctgtttttacatttattgtcaggaggttgttcattgtgaagt 632

                                                                       
Query: 480 agtcttgatatttttcaaaccacgttacggcctcaattttgttgtcttcttttattcctt 539
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 631 agtcttgatatttttcaaaccccgttacggcctcaattttgttgtcttcttttattcctt 572

                                                              
Query: 540 gcatattgatttcacttagtacaatttatttaacgagatgtgtttgatcga 590
           ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 571 gcatattgatttcacttagtaaaatttatttaacgagatgtgtttgatcga 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)