BAC Information

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BAC

Clone NameMSMg01-300J22
Chromosome1 (Build37)
Map Location 149,641,120 - 149,641,468
singlet/doubletsinglet
Overlap genenone
Upstream geneB830045N13Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300J22.T7 (MSMg01no300_j22.b1)MSMg01-300J22.TJ (MSMg01no300_j22.g1)
ACCAG427059AG427060
length737731
length of high quality
(start - end)
349 (387 - 735)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no300_j22.b1 PHD_FILE: MSMg01no300_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:49 2005CHROMAT_FILE: MSMg01no300_j22.g1 PHD_FILE: MSMg01no300_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTGAAATGATTCCACAGCATACCCTCTCAAGGGCTATGCATGA
AGAACTACAAAAGGCTTTAGAATTCACCAAATGAACCTCACTAGTTAGCA
AAACTACAAGCTTTACAATAATTCTTAACCCAAAACATTTATAGATTTTT
GTCAATGTGATTGACAAATTACTAATGAAAGTCCTAAAACTAAGGGGGAA
TTACAGGTCAAAAATTGTGAAGTTATATTATTTGTGGTAATTTTAGTGAC
TTTAGAACACAAATAACAAACTCAAAATTCTCTAGGTTACAAGTCCTCCA
AAGAGGGTAGCTCAACTAATATTCTGGTACCCATGCATCTTTACCAGACG
TGATGTGTAGTAGAGCTTTTAAAGAAATATCATCTATAAAATTCTGTAAT
TAATCCTAAAAACAAAATGAATACATTTGAAATCAGTTATGACATAAGTC
CTGCTATATTTTGCTAGTAGAAATTTTTACTATCTCTGTGAGTATAAAAT
CTTCCACACTGAGAAATATTTTGATTTTCTTCAAAATTTCAAAGATTATA
GACATTATAAAAATTAATTAAGGATAAAGGAACTTGAATAGAATTAGTAA
ACGTCATTCAGCAGGGTTGTCAGTGAAGTTTACTGAAGATCTGGTAACTG
AAATTTCTCAGTAAAACACGGTGTCACATTTTTATCN
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCCTAGTCACTCTCATTCTCGG
GGTGTAATAGTGGGGTGATGGGCAAGCAATGAATCGGGAGCTGTCACGCC
ATATCAGGTGCTGAAACGTCACGCTGCGGGTTATAAAAGCAGCGCATTTT
TCCTGGTTTGGGATCTTCCTGAGAAGCAAGCAATAAAGCTCTTGCCGCGG
AAGATTCTGGTTTGTTGCGTCTTTCTTGCTGGTCGAGCGGGACGCAATAA
GTGGCGCCGAAGAACCCGGGAACTGTCATCACACCGGTGCAAGGAAGATC
CCTTGTTCGCGGGGTTTAATCNTATCCCCCCCCCCCCCGGCTCTACAAGG
TACGTACAATCTTGAAATTTCTCCAGAGTTAAAAGACATTTTGATTGTTT
GCACAGCGATTACACTTTTCCTTTCGGTTTCATTTTGTTTCCACCACTGG
AACTGCTGACTGGTTCTTAGTCGCAGTCAGGCCAGGACAGCGGCAGTATG
GGAATCTCCCATTCTATAGTAGTGGCCTTACGCCTTGTTGCGTCTTTCTT
GCCGGTCGAGTGGGACGCAATATATATATTTGTGTGCGTGTGTGTGTGTT
GTGTGTGTGTGCGTGTGTATAACATTTCCCTCCAATAATTACATTTACCC
CCCCAGACAATGCTGATTCCACCCCTCTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_j22.b1 MSMg01no300_j22.b1 CHROMAT_FILE:
MSMg01no300_j22.b1 PHD_FILE: MSMg01no300_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:49 2005
         (349 letters)



>mm_chr1_149640920_149641668
          Length = 749

 Score =  675 bits (349), Expect = 0.0
 Identities = 349/349 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctttaccagacgtgatgtgtagtagagcttttaaagaaatatcatctataaaattctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctttaccagacgtgatgtgtagtagagcttttaaagaaatatcatctataaaattctg 260

                                                                       
Query: 61  taattaatcctaaaaacaaaatgaatacatttgaaatcagttatgacataagtcctgcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattaatcctaaaaacaaaatgaatacatttgaaatcagttatgacataagtcctgcta 320

                                                                       
Query: 121 tattttgctagtagaaatttttactatctctgtgagtataaaatcttccacactgagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattttgctagtagaaatttttactatctctgtgagtataaaatcttccacactgagaaa 380

                                                                       
Query: 181 tattttgattttcttcaaaatttcaaagattatagacattataaaaattaattaaggata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattttgattttcttcaaaatttcaaagattatagacattataaaaattaattaaggata 440

                                                                       
Query: 241 aaggaacttgaatagaattagtaaacgtcattcagcagggttgtcagtgaagtttactga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggaacttgaatagaattagtaaacgtcattcagcagggttgtcagtgaagtttactga 500

                                                            
Query: 301 agatctggtaactgaaatttctcagtaaaacacggtgtcacatttttat 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agatctggtaactgaaatttctcagtaaaacacggtgtcacatttttat 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)