BAC Information

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BAC

Clone NameMSMg01-300M01
Chromosome1 (Build37)
Map Location 20,597,513 - 20,598,158
singlet/doubletsinglet
Overlap genePkhd1
Upstream genenone
Downstream geneIl17a, Il17f, Mcm3, Paqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300M01.T7 (MSMg01no300_m01.b1)MSMg01-300M01.TJ (MSMg01no300_m01.g1)
ACCAG427156AG427157
length737735
length of high quality
(start - end)
661 (47 - 707)646 (80 - 725)
definitionCHROMAT_FILE: MSMg01no300_m01.b1 PHD_FILE: MSMg01no300_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:58 2005CHROMAT_FILE: MSMg01no300_m01.g1 PHD_FILE: MSMg01no300_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAGTATTCCGCTACATGCTCTTTCTAGGACATTGGAACACTGG
TGAAGACTTAACTGTATCAGGATAAAATTTTAAAAGGCACTATAGTAAGA
TAACACTAAAGGAGAGTATGTGGACCTCCTTAACATCAGGCAGGCTGTTA
AGGAGGGTGACAGGCAGGGAACAGAGAGGAGGGGGTGATGACCGGCTCCT
TAGCACAAGGCCATTTGGCTTGTTAGCGTGGGAGGCTGTGAAGGGCTTGC
CTTTTCACGGTATGGTCTCCAACCTCTCTCCCCCCCTTTCAATTAAATTT
AATAAGGCCACACTTAACTGAGGTGATCAAATGATCTTCTCATCTTTGGA
TGAGTGGGCATTAACCATGGCTGGGGGAGCATTGACCCGATTCCTCCTGT
GGGTGCTGTCATGACCCACAATCATGGCTCTTGGTATCTTTTGGGGAGGG
GGGGGCAGAGCCTTAGAAAAATTCTTTTGGTTGTAACTGGAACTAGATAC
CAACCTCCATCCAAACCGGATGTGTCTTTCAGGGAACTCAGAAATGGTCA
AGTTGGACCTTCCTCTGCAGTGCTTAGTCTCGTACCCATGCTGGTGCCCA
TACTGGATTCGTATTATCACGAACCAGCATGCACAGTTCTGAGTACTGTG
CAGCTCCCAAGGGAGAATTGTCAACCTCAGATTCAGN
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACAAACATGCTTCCAGACAA
GTGTCAGAAAGGGCAGCAAAAGGTGCTGTACTGGCTGGTTTTGTGTGTCA
ACATGACACAAGCTGGAATTATCACAGAGAAAGGAGCCTCCCTTGAGGAA
ATGCCTCCATGAGATTCAGCTGTAAGGCATTCTCTCAATTAGTGATCAAG
GGTAGGAGGGCCCACTGTGAGTGGTGCCATCCTTGGCCTGGTAGTCCTGG
GTTCTATAAAGAAGCAAGCTGAGCAAGCCAGGGGACATCTCTCCATGACC
CCTGCCTCAACTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTC
TTTTGATGATAAACAGCAAGTGAAAGTGTAAGCTAAATAAATCCTTTCTC
CCCAACTTCCTTCTCGGTCATGATATTTGTGCAGGAATAGAAACCCTGAA
GGTGCCATGAAGCAGGCAGATTGACCCCACCCCCACCCCTAGGACCTGGA
ATCTTTATGCCCCTTCAGTATCCAAACAATCAGAATCTGCTGAAAACATA
ACACTTTTCCATAAAAGCAATGTCTGTGGCTCCTCTATGAGCTTCAGGTT
TCCTGCGGTTTTACAGTCACATGAGGGTTCAAATCCTGACTCTGCCATTC
ATTGCCTGGATAATGTGGCAAGCGGTCTAGATGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_m01.g1 MSMg01no300_m01.g1 CHROMAT_FILE:
MSMg01no300_m01.g1 PHD_FILE: MSMg01no300_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:58 2005
         (646 letters)



>mm_chr1_20597313_20598358
          Length = 1046

 Score = 1241 bits (642), Expect = 0.0
 Identities = 645/646 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaaacatgcttccagacaagtgtcagaaagggcagcaaaaggtgctgtactggctggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaaacatgcttccagacaagtgtcagaaagggcagcaaaaggtgctgtactggctggt 260

                                                                       
Query: 61  tttgtgtgtcaacatgacacaagctggaattatcacagagaaaggagcctcccttgagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgtgtgtcaacatgacacaagctggaattatcacagagaaaggagcctcccttgagga 320

                                                                       
Query: 121 aatgcctccatgagattcagctgtaaggcattctctcaattagtgatcaagggtaggagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgcctccatgagattcagctgtaaggcattctctcaattagtgatcaagggtaggagg 380

                                                                       
Query: 181 gcccactgtgagtggtgccatccttggcctggtagtcctgggttctataaagaagcaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcccactgtgagtggtgccatccttggcctggtagtcctgggttctataaagaagcaagc 440

                                                                       
Query: 241 tgagcaagccaggggacatctctccatgacccctgcctcaactcctgcttcctgacctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagcaagccaggggacatctctccatgacccctgcctcaactcctgcttcctgacctgc 500

                                                                       
Query: 301 ttgagttccagtcctgacttcttttgatgataaacagcaagtgaaagtgtaagctaaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgagttccagtcctgacttcttttgatgataaacagcaagtgaaagtgtaagctaaata 560

                                                                       
Query: 361 aatcctttctccccaacttccttctcggtcatgatatttgtgcaggaatagaaaccctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatcctttctccccaacttccttctcggtcatgatatttgtgcaggaatagaaaccctga 620

                                                                       
Query: 421 aggtgccatgaagcaggcagattgaccccacccccacccctaggacctggaatctttatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggtgccatgaagcaggcagattgaccccacccccacccctaggacctggaatctttatg 680

                                                                       
Query: 481 ccccttcagtatccaaacaatcagaatctgctgaaaacataacacttttccataaaagca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccccttcagtatccaaacaatcagaatctgctgaaaacataacacttttccataaaagca 740

                                                                       
Query: 541 atgtctgtggctcctctatgagcttcaggtttcctgcggttttacagtcacatgagggtt 600
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgtctatggctcctctatgagcttcaggtttcctgcggttttacagtcacatgagggtt 800

                                                         
Query: 601 caaatcctgactctgccattcattgcctggataatgtggcaagcgg 646
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caaatcctgactctgccattcattgcctggataatgtggcaagcgg 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)