BAC Information

Click to search

BAC

Clone NameMSMg01-300M04
Chromosome1 (Build37)
Map Location 166,761,867 - 166,762,095
singlet/doubletsinglet
Overlap genenone
Upstream geneKifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt
Downstream geneXcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300M04.T7 (MSMg01no300_m04.b1)MSMg01-300M04.TJ (MSMg01no300_m04.g1)
ACCAG427161AG427162
length733735
length of high quality
(start - end)
204 (453 - 656)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no300_m04.b1 PHD_FILE: MSMg01no300_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:59 2005CHROMAT_FILE: MSMg01no300_m04.g1 PHD_FILE: MSMg01no300_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAGGTTAACTAACAGAGGGATCCAACTGAGGCCTGGTTAGGTCCC
TTTATGTAGCACTTATATGGACTTTTGTTGTTGTTGTTAGACAAAGAAAA
TGCTATTTCAGGATCTCTTTACAAGCCCAAAAGAGATTTGAATTTTCCTT
TCATGAACATATCGATTAAAAATGCATGTGAGATTGGGCTTGGTATCTAA
GATGGCCTAGTGATTTCTTCCAAAGAAACAAATCAAAAAGGGAGTGAGTT
ATTCAAAGCCAAAGGAATGTTTTTTTTAAGCCCAAAGAGACAATTTAGAT
TTCTGACTAATTTTTTTTATCTCGCGCTAACCTAGGCCCTGCTGCACCTA
AGCATTCCTTGTAGACCCTCAAAAAAAAAAAAAAAGTTCGTGGGGGGGGG
GGTTTGTTTTTAATTCTACAACCTTAAGAAAGACCATTGGATTACACAAT
GGCCTAGTACACCCAAATCAAATGGGATTACTGGCACTTACAAATTAGCT
GCTTCCTGAGCCGCCCTGAGGATACAGATGTGATCCAGAAGCGCTGGTAC
ATCATGTAAACTTGGCTCTTGGGAGGTGAAGGCAGAAGTGCCTGGAGTTG
AAAGTTATTCTATCTATTTAGTGAATCCAAGGCCAGCTTAGGCTACATGA
GACCTGTCTAAGGAAAGACATTGATGTCTTTTT
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGTCCATTCACACTGGTGTGTGAG
TTTGGGCAGTTTACCTCCCACTTCAAGGATTTGGGGGTCTGTTTTTATAA
ATGCCTACCTTTCTGTAGATGCTATATTAGATGGAAGGGCAGCTAGGTCA
TAGGGCACAAACACCTTAAATGCATGTGCTTCCTTCTCCTGCCACTAACT
AAACCACCAGATAAGGATTTGGCAGGTTATACTGTCCTTTTATATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATATATATTGCACCCTGCGCCACAAAACATTTGCCTATG
TATGAGTGGATGGAATTTATTTAATATAGAAACAGGATCTAGGGATATGG
CCTAGGCTGTCTTCAAACTTGTAATATACTTCTCTCAGCCTCCTAACTTC
TAGGTTACAGACGTGCGTTCCCACTCCTGGCTGTATAGAGATGTGTGTTC
CCACCCCTGGAATCTGTATGGAGCATTTGCCTGCTAGATCTGTCCCTGTG
TTTTGAATAAATCATTTCCCTCATTTGTCTTCCATCTGAGAGCTGGCAGC
AGGAGGTAAGAGGGTCCCCTCACAAGCTTGATGCGCTCCCTCCCTCCCCT
AGTTTGCTCAAGTATATCCACTCCTGGCACGTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_m04.g1 MSMg01no300_m04.g1 CHROMAT_FILE:
MSMg01no300_m04.g1 PHD_FILE: MSMg01no300_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:59 2005
         (292 letters)



>mm_chr1_166761682_166762372
          Length = 691

 Score =  329 bits (170), Expect = 1e-94
 Identities = 215/230 (93%), Gaps = 1/230 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtccattcacactggtgtgtgagtttgggcagtttacctcccacttcaaggatttggg 60
           |||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct: 414 aagtccattcacactggtgtgtgagtttgggcaggttaactcctacttcaaggatttggg 355

                                                                       
Query: 61  ggtctgtttttataaatgcctacctttctgtagatgctatattagatggaagggcagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ggtctgtttttataaatgcctacctttctgtagatgctatattagatggaagggcagcta 295

                                                                       
Query: 121 ggtcatagggcacaaacaccttaaatgcatgtgcttccttctcctgccactaactaaacc 180
           | ||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||
Sbjct: 294 gatcatagggcacaaacaccaaaaatgcatgtgcttccttctcctgccacaaactaaacc 235

                                                             
Query: 181 accagataaggatttggcaggttatactgtccttttatatatatatatat 230
           |||||||| ||| ||| || |||||| |||||||| ||| || |||||||
Sbjct: 234 accagatagggacttg-cacgttatattgtcctttaatagatgtatatat 186


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 691
Length adjustment: 9
Effective length of query: 283
Effective length of database: 682
Effective search space:   193006
Effective search space used:   193006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)