Query= MSMg01no301_c01.b1 MSMg01no301_c01.b1 CHROMAT_FILE:
MSMg01no301_c01.b1 PHD_FILE: MSMg01no301_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:27 2005
(411 letters)
>mm_chr1_3410115_3410925
Length = 811
Score = 745 bits (385), Expect = 0.0
Identities = 397/401 (99%)
Strand = Plus / Minus
Query: 1 cttttacaatcacaaaaaagaaaatccatgaactagtatcatagtaaggtcaccagacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cttttacaatcacaaaaaagaaaatccatgaactagtatcatagtaaggtcaccagacag 542
Query: 61 gtgagctctagacaggcagggtatttgaattatgtccttgtcatatcctcagttgcatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gtgagctctagacaggcagggtatttgaattatgtccttgtcatatcctcagttgcatgg 482
Query: 121 ttggtagaggattggtatgcaagcttaggaaacttccaaaagctaagaggtgccatatct 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttggtagaggatcggtatgcaagcttaggaaacttccaaaagctaagaggtgccatatct 422
Query: 181 gctacagaagcatggtatatgttactgaggacagcccaagttaaattttgtcccttttct 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gctacagaagcatggtatatattactgaggacagcccaagttaaattttgtcccttttct 362
Query: 241 acagtcaagttctgttcaggcaaggttgaactggttgcatatccctaaagaatatgactg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acagtcaagttctgttcaggcaaggttgaactggttgcatatccctaaagaatatgactg 302
Query: 301 cttcagagaattttactcagcccacagagtccttgtatcaagcggcccattagttaaggg 360
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 301 cttcagagaatttcactcagcccacagagcccttgtatcaagcggcccattagttaaggg 242
Query: 361 atgtctgtcccaaccctgatgttacactagaaagcactatg 401
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgtctgtcccaaccctgatgttacactagaaagcactatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_c01.g1 MSMg01no301_c01.g1 CHROMAT_FILE:
MSMg01no301_c01.g1 PHD_FILE: MSMg01no301_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:27 2005
(507 letters)
>mm_chr1_3259263_3260169
Length = 907
Score = 913 bits (472), Expect = 0.0
Identities = 502/518 (96%), Gaps = 11/518 (2%)
Strand = Plus / Plus
Query: 1 tttgcatagtttgtaatgtttgcctggtgttttacaaatatttcctcccagtctaagttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tttgcatagtttgtaatgtttgcctggtgttttacaaatatttcctcccagtctaagttc 249
Query: 61 tcttttcattcttatgacttgtttcttgattagcaggtaatttctaaatcacacatttag 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 250 tcttttcattcttatgacttgtttctagattagcaggtaatttctaaatcacacatttag 309
Query: 121 tttaaaatgtctcctatgtcatgaatatctttttaaaactgaagtgatgagctgaggtcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tttaaaatgtctcctatgtcatgaatatctttttaaaactgaagtgatgagctgaggtcc 369
Query: 181 agagaggttaacttgatccaaaaataacagaacatcaagag----------ac-tcttcc 229
||||||||||||||||||||||||||||||||| ||||||| || ||||||
Sbjct: 370 agagaggttaacttgatccaaaaataacagaacgtcaagagccagagtttcacctcttcc 429
Query: 230 ttccttattttattttcaaacacatttctccatggtttttcactttgcacattctttatc 289
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 430 ttccttattttattttcaaacacatttctccatggttttacactttgcacattctttatc 489
Query: 290 ataattctgtttttaaacaaataacatgggcttgataccttctactgggaatatggatag 349
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 490 ataattctgtttttaaacaaataacacgggcttgataccttctactgggaatatggatag 549
Query: 350 ataacttttgagatagtagtccttcactcctaaattctgtctgtagaaaattaatagagg 409
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ataacttttgagatagtagcccttcactcctaaattctgtctgtagaaaattaatagagg 609
Query: 410 gtttttagagctgcataaatggtttagagagagaacacagagggaagcatcaactattac 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gtttttagagctgcataaatggtttagagagagaacacagagggaagcatcaactattac 669
Query: 470 agtttctttgtgctacacttttattcactgttgacgcc 507
||||||||||||||||||||||||||||||||||||||
Sbjct: 670 agtttctttgtgctacacttttattcactgttgacgcc 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
