Query= MSMg01no301_h08.b1 MSMg01no301_h08.b1 CHROMAT_FILE:
MSMg01no301_h08.b1 PHD_FILE: MSMg01no301_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:52 2005
(647 letters)
>mm_chr1_62800229_62801272
Length = 1044
Score = 1123 bits (581), Expect = 0.0
Identities = 627/647 (96%), Gaps = 11/647 (1%)
Strand = Plus / Plus
Query: 5 gaattcttgtc----ttgccccatttcttttgtggtttgtcattttgttattcttgttgt 60
||||||||||| || |||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgtcatgatt----cattccttttgtggtttgtcattttgttattcttgttgt 260
Query: 61 tgttgtataaagattagaatgtgaattagacttcaggctaggataggacattgctgtcca 120
|||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 261 tgttgtgtaaagattagaatgtgaatcagtcttcaggctaggataggacattgctgtcca 320
Query: 121 gagccatgcatgcaactgcatgatctaaacatggttacatgggctctgaagagggcaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 aagccatgcatgcaactgcatgatctaaacatggttacatgggctctgaagaggacaggt 380
Query: 181 gccctttccaagttcaagtctcccagtttgtacgtctccctccattaggactgagaggag 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 gccctttccaagttcaagtctcccagtttgtacatctccctccattaggactgagaggag 440
Query: 241 tccagtgtgctgggtaattcagtttgtcccttatccatttgtcgtgggatgagctcagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccagtgtgctgggtaattcagtttgtcccttatccatttgtcgtgggatgagctcagac 500
Query: 301 ctttagcctctgcacttaggaagctggagggaaaatttcattatgcatgcgcttgaacct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttagcctctgcacttaggaagctggagggaaaatttcattatgcatgcgcttgaacct 560
Query: 361 ttctatgtcaggctgccgttagccaacttccctgggtctcctgggtgctgaactgtctca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctatgtcaggctgccgttagccaacttccctgggtctcctgggtgctgaactgtctca 620
Query: 421 gagctgaggccagccaccctggcgctgccaaccttggtgctggattctttgtgctcctag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagctgaggccagccaccctggcgctgccaaccttggtgctggattctttgtgctcctag 680
Query: 481 gccaaggctgagcacggagattctgggaaagaaagggaaacagacagaacattggtgtgg 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccaaggctgaacacggagattctgggaaagaaagggaaacagacagaacattggtgtgg 740
Query: 541 ctgccttaaaaaaaaaagtccatagacactgatatcaggaagctctcagatgcagaggcc 600
|||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||
Sbjct: 741 ctgccttaaaaaaaaa-gtgcatagacactgatatcaggaagctc--agatgcagaggcc 797
Query: 601 tctcatgccctgatgaggcatctgccttcatccctccctgcatcttc 647
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tctcatgccctgatgaggcatctgccttcatccctccctgcatcttc 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1044
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1034
Effective search space: 658658
Effective search space used: 658658
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_h08.g1 MSMg01no301_h08.g1 CHROMAT_FILE:
MSMg01no301_h08.g1 PHD_FILE: MSMg01no301_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:52 2005
(239 letters)
>mm_chr1_62963503_62964141
Length = 639
Score = 441 bits (228), Expect = e-128
Identities = 234/236 (99%)
Strand = Plus / Minus
Query: 1 ctacattaaatagtgctggctgtgattccggatgttaaaagaactgtatggtgaccaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctacattaaatagtgctggctgtgattccggatgttaaaagaactgtatggtgaccaaga 377
Query: 61 ggctgtcttgtcctaacaagctgataacttggaaggtaaagactccaacagctgaaggtg 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggctctcttgtcctaacaagctgataacttggaaggtaaagactccaacagctgaaggtg 317
Query: 121 taccaggtcatactttaagatgtatctgtagactttgttttcttggctgaacatccccag 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 316 taccaggtcatactttaagaagtatctgtagactttgttttcttggctgaacatccccag 257
Query: 181 gctgattctcgtccttctgtgggaattaagaccaggttggtgattgtaggttagtg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gctgattctcgtccttctgtgggaattaagaccaggttggtgattgtaggttagtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
