Query= MSMg01no301_i16.b1 MSMg01no301_i16.b1 CHROMAT_FILE:
MSMg01no301_i16.b1 PHD_FILE: MSMg01no301_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:58 2005
(360 letters)
>mm_chr1_179945877_179946640
Length = 764
Score = 646 bits (334), Expect = 0.0
Identities = 352/360 (97%), Gaps = 4/360 (1%)
Strand = Plus / Plus
Query: 4 ggaattcacacgatatacccaattgccagaaaccaagtaagttgatttcagtgatatttc 63
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacacgatagagccaattgccagaaaccaagtaagttgatttcagtgatatttc 263
Query: 64 attgaatcttgaaaagccatcacaagtacagtttgggctcttttgggataacaaaaggct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attgaatcttgaaaagccatcacaagtacagtttgggctcttttgggataacaaaaggct 323
Query: 124 tacatattgaaaggaaaaagagaaaagagaccacagtagcattctccttcagctctcctg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tacatattgaaaggaaaaagagaaaagagaccacagtagcattctccttcagctctcctg 383
Query: 184 tcataaattgctttaaacaattttagtcggaaataaaaagaagacctatttgaaagtttc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcataaattgctttaaacaattttagtcggaaataaaaagaagacctatttgaaagtttc 443
Query: 244 tgcctgtc----actatttttcatatcaatataaattgtgaaatgatacctgatttttaa 299
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 444 tgcctgtctgtcactatttttcatatcaatataaattgtgaaatgatatctgatttttac 503
Query: 300 ttcagtttccatttttaattgtttgcttccctccctccctccctccctccctccctccct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcagtttccatttttaattgtttgcttccctccctccctccctccctccctccctccct 563
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 764
Length adjustment: 9
Effective length of query: 351
Effective length of database: 755
Effective search space: 265005
Effective search space used: 265005
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_i16.g1 MSMg01no301_i16.g1 CHROMAT_FILE:
MSMg01no301_i16.g1 PHD_FILE: MSMg01no301_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:58 2005
(239 letters)
>mm_chr1_180111679_180112318
Length = 640
Score = 362 bits (187), Expect = e-104
Identities = 220/231 (95%), Gaps = 1/231 (0%)
Strand = Plus / Minus
Query: 4 ctagtagatcttgagactgt-tattttccatttcaaaagtgccagccacccaaagagata 62
|||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||
Sbjct: 434 ctagtagatcttgagactgtccattttccatttccaaagtaccagccacccaaagagata 375
Query: 63 gcacagcttggaatgtcaagggatcccttttaatctgcatgtctttagttgtggagtgac 122
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 374 gcacagcttggaatgtcaagggatcccttttaatctgcatgtctttagttttggaatgac 315
Query: 123 ttttgtcagtgatgaccaccagcttgtgtcttcccagatggaaagcaaagtgtttggcaa 182
|||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 314 ttttgttagtgatgaccaccaacttgtgtcttcccagatggaaaggaaagtgtttggcaa 255
Query: 183 agtctttgaaaatagcttctcatgttaccactactgtctgtgtttgatggc 233
|||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 254 agtctttgaaaatagcagctcatgttaccactactgtctgtgtttgatggc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 640
Length adjustment: 9
Effective length of query: 230
Effective length of database: 631
Effective search space: 145130
Effective search space used: 145130
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
