Query= MSMg01no301_p24.b1 MSMg01no301_p24.b1 CHROMAT_FILE:
MSMg01no301_p24.b1 PHD_FILE: MSMg01no301_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:32 2005
(591 letters)
>mm_chr1_194064636_194065626
Length = 991
Score = 1075 bits (556), Expect = 0.0
Identities = 580/588 (98%), Gaps = 2/588 (0%)
Strand = Plus / Plus
Query: 5 gaattcactgtgagtttcg-ctggaagcaaggagaagagaacatgcagaaaactccccaa 63
|||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgtgagctt-gactggaagcaaggagaagagaacatgcagaaaactccccaa 263
Query: 64 tagcctcaagggacattccctactgtctgattagttttttaagtcacatgtgttcaaatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tagcctcaagggacattccctactgtctgattagttttttaagtcacatgtgttcaaatt 323
Query: 124 gtattttaaattatatggccttggtcgtgtacttcacaatttgagtgcctaggtgttatg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 324 gtattttaaattatatggccttggtcgtgtacttcacaatttgagtgcctaggtggtatg 383
Query: 184 gtgtacgtcatgggagtggttcaggaagcctgcttgtgcctaacatttttctctgaacaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgtacgtcatgggagtggttcaggaagcctgcttgtgcctaacatttttctctgaacaa 443
Query: 244 ttaactcacaaatgggaaacaaccagataatagagttgacaattttgcatggagtcctgg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttaactcacaaatgggaaacaaccagataatagagttgacaattttgcatggagtcctgg 503
Query: 304 gcactgctgtcgggctctgggatgagtcactagactgccttcactcatagctctgtgtgt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcactgctgtcgggctctgggatgagtcactagactgccttcactcatagctctgtgtgt 563
Query: 364 gacagggcaccttcctcctttgttctgctgtctccctttgactaatttcctaactcacac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gacagggcaccttcctcctttgttctgctgtctccctttgactaatttcctaactcacac 623
Query: 424 atgtcacagagcagggactgaaattcaagcagggttttctgtttggtaactggtgggtgg 483
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 624 atgtcacagagcagggactgaaattcaagcagggttttctgtttggtaaccggtgggtgg 683
Query: 484 gttatacctgggctcagagagaaatacctcctgttccaactgttggtctttctctctgct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gttatacctgggctcagagagaaatacctcctgttccaactgttggtctttctctctgct 743
Query: 544 tctttcatggaaagcatgtgcagaggctttaacttcctctctgctgag 591
|||||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 744 tctttcatggaaagcaggtgcagagcctttaccttcctctctgctgag 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_p24.g1 MSMg01no301_p24.g1 CHROMAT_FILE:
MSMg01no301_p24.g1 PHD_FILE: MSMg01no301_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:32 2005
(620 letters)
>mm_chr1_194123030_194124049
Length = 1020
Score = 843 bits (436), Expect = 0.0
Identities = 487/530 (91%), Gaps = 40/530 (7%)
Strand = Plus / Minus
Query: 1 agatgaatcaaaacaacccttccacggtatcctaagatgggtccattgtgacaagacatc 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 530 agatgaatcaaaacaacccttccagggtatcctaagatgggtccattgtgacaagacatc 471
Query: 61 acctaggaaacccaggtaaggggcaggagaagtagaaggagcacttcagaaagcctacgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 acctaggaaacccaggtaaggggcaggagaagtagaaggagcacttcagaaagcctacgt 411
Query: 121 caagactaaatgagtgaccagagggattagttctgagaaccagaattggaactggattct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 caagactaaatgagtgaccagagggattagttctgagaaccagaattggaactggattct 351
Query: 181 gtgggaagacaagaccaataagcactgtacacaatacacaagcattttactaacctccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gtgggaagacaagaccaataagcactgtacacaatacacaagcattttactaacctccaa 291
Query: 241 ggtccattgggaaagcagtgttttctagtgctgagaataatagtcacaggcaactatgga 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ggtccattgggaaagcaatgttttctagtgctgagaataatagtcacaggcaactatgga 231
Query: 301 tccagaaaagggctcggcaagtacacagtacttaatagcctgagttagcgtccagaatca 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 230 tccagaaaagggctcggcaagtacacagtacttaatagcctgagttagcatccagaatca 171
Query: 361 atgtaaagtggaaggagagaactgaccccatagagctgacctccacaagaatgccatgtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 atgtaaagtggaaggagagaactgaccccatagagctgacctccacaagaatgccatgtc 111
Query: 421 acctgtgtgcctgcacacacacac------------------------------------ 444
||||||||||||||||||||||||
Sbjct: 110 acctgtgtgcctgcacacacacacacacacacacacacacacacacagagagagagagag 51
Query: 445 ----agagagagagagagagagagagagaataaactttaagagcaactat 490
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 agagagagagagagagagagagagagagaataaactttaagagcaactat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
