BAC Information

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BAC

Clone NameMSMg01-302E01
Chromosome1 (Build37)
Map Location 148,815,184 - 148,815,492
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383571, B830045N13Rik, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302E01.T7 (MSMg01no302_e01.b1)MSMg01-302E01.TJ (MSMg01no302_e01.g1)
ACCAG428208AG428209
length721724
length of high quality
(start - end)
315 (43 - 357)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no302_e01.b1 PHD_FILE: MSMg01no302_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:51 2005CHROMAT_FILE: MSMg01no302_e01.g1 PHD_FILE: MSMg01no302_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTTTCATTTCCTATTTTCATCATGTTTCTATTCAAAAATTTTAGAAG
AAAATCTTCATTTCCCCTTTCCATTTTTTGTTTCTCTTGGTCTTACAAAA
CTCACGTCCAGATAGACCTCCTCTATATAATTCAATGAAGGTTACCATTT
TAGTGATTATTGCCCAACAATTTGCTTAACCCAAATGTTTATCTCTTCCT
TAGTTTCATTTAAACTATCAAATCATATTGCACAATTGAATCTTCACTTT
TATATCTGTAATTCTCTACAGTTGAAGGTGAGTTTAGAAGTTTCCTTTTT
GAAGTATATTTTATGTTTTTCCCACTACCAAACTAATTCTATAGAGATTA
CTAGAAATCTTACTTTGGACTAAATAGAAGATTCTATTCTATTAGACTAT
TTATCATCTAGAAGATGTCTTATGATGATAAATAATGATCTGATTAAACA
TGGTAGAGAGTTTTCAAAAGAAGAAACGGATGTTGTTGTTAAACACTATA
CAAAGCTTTTGGCACCCTTATCAACCTCATGAGTCAAAATGGCCAACATA
AAAAAATATAAATAATAAGAAATTCTGATGTGTGTGGAAACAAGAGTAGT
TATACAATACTTGTGGTATGCAAACTACAACAGCCACCTTGCGAACTAGT
CTGTATGTTTCTAAGGAAAAA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAAACCTGATAAACAGCTTCAGTGAA
GTAGCTGGATATAACATTAACTCAAACAAGTCCATGGCCTTCTCTACACA
AAGAATAAACAGGCTGAGAAAGAAATTAGGGAAGCAACACCCTTCTCAAT
AGTCACAAATAATTTAAAATATCTTGGCGTGACTCTAACTAAGGAAGTGA
AAGATCTGTATGATAAAAATTTCAAATCCCTGAAGAAAGAAATTAAAGAA
TATCTCAGAAGATGGAAATATCTCCCATGCTCATGGATTGGCAGGATCAA
TATAGCAAAAATGGTTATCTTGCCCCCCGCAATCTCCAGTTCAATGCAAT
CCCTATCAAAATTCCAACTCAATTCTTACAACGAATTAGGAAGGGCAATC
GGCAGATTCATCTGGAATAACAGTAAAAACTCTTCTCAAGGATAAAAGAA
CCTCTGGTGGAATCACCATGCCTGACCTAAAGCTGTACTGCAGAGCAATT
GTGATTAAAAACTGCATGGTACTGGTATAGCAACAGACCAATGGAACAGA
ATAAAAGACCCAGAGATGAAACCACACACCTATGGTCACTTGATCTTTGA
CAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAAT
GGTGCTGGCACAACTGGCAGTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_e01.b1 MSMg01no302_e01.b1 CHROMAT_FILE:
MSMg01no302_e01.b1 PHD_FILE: MSMg01no302_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:51 2005
         (315 letters)



>mm_chr1_148814980_148815694
          Length = 715

 Score =  551 bits (285), Expect = e-161
 Identities = 303/309 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtttcatttcctattttcatcatgtttctattcaaaaattttagaagaaaatc 64
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtttcatttcctattttcatcatgattctattcaaaaattttagaagaaaatc 264

                                                                       
Query: 65  ttcatttcccctttccattttttgtttctcttggtcttacaaaactcacgtccagataga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcatttcccctttccattttttgtttctcttggtcttacaaaactcacgtccagataga 324

                                                                       
Query: 125 cctcctctatataattcaatgaaggttaccattttagtgattattgcccaacaatttgct 184
           | ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 325 cttcctctatataattcgatgaaggttaccattttagtgattattgcccaactatttgct 384

                                                                       
Query: 185 taacccaaatgtttatctcttccttagtttcatttaaactatcaaatcatattgcacaat 244
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 taacccaaatgtttatctcttccttagtttcatttaaactatcagatcatattgcacaat 444

                                                                       
Query: 245 tgaatcttcacttttatatctgtaattctctacagttgaaggtgagtttagaagtttcct 304
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgaatcttcacttttatttctgtaattctctacagttgaaggtgagtttagaagtttcct 504

                    
Query: 305 ttttgaagt 313
           |||||||||
Sbjct: 505 ttttgaagt 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)