BAC Information

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BAC

Clone NameMSMg01-302G13
Chromosome1 (Build37)
Map Location 150,084,333 - 150,084,645
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100042792, LOC435647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302G13.T7 (MSMg01no302_g13.b1)MSMg01-302G13.TJ (MSMg01no302_g13.g1)
ACCAG428307AG428308
length741732
length of high quality
(start - end)
320 (40 - 359)283 (69 - 351)
definitionCHROMAT_FILE: MSMg01no302_g13.b1 PHD_FILE: MSMg01no302_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:02 2005CHROMAT_FILE: MSMg01no302_g13.g1 PHD_FILE: MSMg01no302_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TTTCTCAAGGACTTTTAAGCATTATTAAATAGTAAATGTTATACAGTAAC
TGAAAGTGTAGTGCAGTGTGTAACAAGTATGAGAAAAACATCCTGCAACT
GTTTAGGAAATAGTAGGAATAAAGGATGGCATTTGAATTAAAAAATAAAC
ACCAGCAAACATTTTATACAAAGAATCCATAGAAAAGCTAAACACTTACA
GAAAAATTAGTGAGCATTATAAACCACAAATCAGTATATACTTACTTTGT
ACATAACGAAATAGATACACATTTGATTCTGTTCAGTCAGCTAGTTTAGA
GTTTACTTTTTTACAAACACCCCCGCACCAAAGTGACTTTGGTCTACAAA
ACACTTGCCTGGCAAGATGGAATACTTGACTTCATTAGCAGAATACCTAT
AGAAAAGACTGGATATGTGGCCATAGTCCCAAAGTTGGTTAAAGAAATAG
ACAGGCCCTTAGAGTTCATTGACTGGTTAATTTTGTCTAAGGGACATGCA
TCAATCAGGTGAGAAATCCTGGTTATATGGGGAGGTTTAGTTGGGGAAGT
AGAAAGAACAGTAGAGAAGGAGAGGGAGGGAAGAGGTATAAATAACACTA
AGGAAGAACGAAATAGCCATAGATAATTGTATTGTTATTAAACTATATTT
ATGTATAATTACATAATGCATTTATATTAAAGTTTTGCCAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAATGGG
TGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTG
GTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTC
GTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTTGTCAGGA
TGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATT
GAGGATTTTTGCATCTTTATTCATAAGAGAAATTGGTCTGAAGTTCTCTA
TTTTGGTAGGTTCCTTNTGCGGTCCACTATCAGAGTAATAGTGGCTTCAT
AAAATGAGTTGGGTAGAAAAAAAAATACTTCTATCTTGGGAGGGAGTTTG
TGCAAAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGATCTCTGCACT
AAACCCGTCTGGTCCTGAGCTTTTTTTGGCTGGCAGACTATTTATAACTG
CTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAGGTCAACTTGATCC
TGATTCAACTTTGGTACCTGGTATCTGCCCTGAAATTTTCCATTTCGTCC
AGGTTTTCCCGGTTTTGTTGAGATACCCCTTTGTATAACGATCTGAGGGC
GTTCTGTAATCCTTACAAATCTGCCGATAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_g13.b1 MSMg01no302_g13.b1 CHROMAT_FILE:
MSMg01no302_g13.b1 PHD_FILE: MSMg01no302_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:02 2005
         (320 letters)



>mm_chr1_150084129_150084848
          Length = 720

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttctcaaggacttttaagcattattaaatagtaaatgttatacagtaactga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttctcaaggacttttaagcattattaaatagtaaatgttatacagtaactga 264

                                                                       
Query: 65  aagtgtagtgcagtgtgtaacaagtatgagaaaaacatcctgcaactgtttaggaaatag 124
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 aagtgtagtgcagtgtgtaacaagtgtgagaaaaacatcctgcaactgtttaggaaatag 324

                                                                       
Query: 125 taggaataaaggatggcatttgaattaaaaaataaacaccagcaaacattttatacaaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 taggaataaaggatggcatttgaattaaaaaataaacaccagcaaacatttgatacaaag 384

                                                                       
Query: 185 aatccatagaaaagctaaacacttacagaaaaattagtgagcattataaaccacaaatca 244
           |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 385 aatccatagaaaagctaaactcttacagaaaaattagtgagcattataaaccataaatca 444

                                                                       
Query: 245 gtatatacttactttgtacataacgaaatagatacacatttgattctgttcagtcagcta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtatatacttactttgtacataacgaaatagatacacatttgattctgttcagtcagcta 504

                        
Query: 305 gtttagagtttac 317
           |||||||||||||
Sbjct: 505 gtttagagtttac 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)