Query= MSMg01no302_h09.b1 MSMg01no302_h09.b1 CHROMAT_FILE:
MSMg01no302_h09.b1 PHD_FILE: MSMg01no302_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:06 2005
(318 letters)
>mm_chr1_188685929_188686645
Length = 717
Score = 526 bits (272), Expect = e-154
Identities = 301/314 (95%), Gaps = 7/314 (2%)
Strand = Plus / Minus
Query: 5 gaattcatagcatctcgataaccgcacctattatccattaaactatttttgtagattctt 64
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 698 gaattcatagcatctcgataaccccacctattatccattaaactatttttgtagattctt 639
Query: 65 gagatttactgcgggatccattggttgacacggtgatgatgacaggggcctgacaagcac 124
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 638 gagatttactgcgggatccattggttgatacggtgatgatgacaggggcctgacaagcac 579
Query: 125 cagaattaagcagatgactctaggtggagcaggtgtcacagtattggtgcacaaagaagc 184
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 578 cagaattaagcagatgactataggtgaagcaggtgtcacagtattggtgcacaaagaagc 519
Query: 185 acaaagaagtatgcttctcactattagatattggatagatgtagaaattgttcttccaga 244
||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 518 ------tagtatgcttctcactattagatattggatagatgtagaaattgtttttccag- 466
Query: 245 aaaaaattcaagagtgtttgtataattcattaaagataaataaaatgttaaagccaatgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aaaaaattcaagagtgtttgtataattcattaaagataaataaaatgttaaagccaatgt 406
Query: 305 ttggaatcatctat 318
||||||||||||||
Sbjct: 405 ttggaatcatctat 392
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space: 218772
Effective search space used: 218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no302_h09.g1 MSMg01no302_h09.g1 CHROMAT_FILE:
MSMg01no302_h09.g1 PHD_FILE: MSMg01no302_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:06 2005
(479 letters)
>mm_chr1_188531793_188532669
Length = 877
Score = 891 bits (461), Expect = 0.0
Identities = 474/479 (98%), Gaps = 2/479 (0%)
Strand = Plus / Plus
Query: 1 agcaggagaggagcctctcttgtctcacgggagagcagttctccagagcggatcttggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcaggagaggagcctctcttgtctcacgggagagcagttctccagagcggatcttggtt 260
Query: 61 gtcataaatgaatcctgtcttcggcaacgctaaggcttctgccatctccatattcaggaa 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 gtcataaatgaatcctgtcttcggcaacactaaggcttctgccatctccatattcaggaa 320
Query: 121 acaaaaccaccatatttaaggatcataagtgctcagagcgctacgcaataaggtaagaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaaaccaccatatttaaggatcataagtgctcagagcgctacgcaataaggtaagaga 380
Query: 181 gcacattacatacacagtctttactaccccagtggtaagggggactggaccacgctgtag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcacattacatacacagtctttactaccccagtggtaagggggactggaccacgctgtag 440
Query: 241 ttcaaagtcctgcactgtggctttatgaacctaaggaagttattcagagactgttcctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcaaagtcctgcactgtggctttatgaacctaaggaagttattcagagactgttcctca 500
Query: 301 cctgtgagaacggggtcatatgcagaagactatagagagggggggggtcatcatacaagg 360
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 501 cctgtgagaacggggtcatatgcagaagactatagggaggggggg--tcatcatacaagg 558
Query: 361 catgggaagtgtttataacaaagtcggaccctagtgtctgctcattaaactaggtcctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 catgggaagtgtttataacaaagtcggaccctagtgtctgctcattaaactaggtcctgt 618
Query: 421 tatcccctctccatcgcagccaggcacgtctgtgtctggtctccactcatcacccagga 479
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 619 tatcccctctccatcgcagccaggcatgtctgtgtctggtctccactcatcacccagga 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 877
Length adjustment: 10
Effective length of query: 469
Effective length of database: 867
Effective search space: 406623
Effective search space used: 406623
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
