BAC Information

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BAC

Clone NameMSMg01-302M06
Chromosome1 (Build37)
Map Location 168,744,685 - 168,744,995
singlet/doubletsinglet
Overlap genenone
Upstream geneCd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895
Downstream geneLOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302M06.T7 (MSMg01no302_m06.b1)MSMg01-302M06.TJ (MSMg01no302_m06.g1)
ACCAG428566AG428567
length738759
length of high quality
(start - end)
332 (43 - 374)229 (133 - 361)
definitionCHROMAT_FILE: MSMg01no302_m06.b1 PHD_FILE: MSMg01no302_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:29 2005CHROMAT_FILE: MSMg01no302_m06.g1 PHD_FILE: MSMg01no302_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAAAGGCTGCCGTGGCATTAGTCAACTTGATAGCTTATGTATTTTGTT
TAAAAAATTGCTATTTATATCTTGCTTATAGTATGGGAGATGTTTCAGAT
TGTAAAAACAGAGATTATTTCTCAATGGAAGAGCAACAGAAAAGTTGTAA
GTTAGTACAATTAGTTATATTTTCCTAAACCTTTTGTAGCATTAGGTATT
TCTTTATTCCTACACTTTAACATTATTTTAAATATGTCTATAAGTTTTCC
TAGTTGAAAAAGAAGAGTATTTGTGTGGAAGGGGTGTCAAGAGAGCACTA
GGCAGGTGATATTTCTTGCCTCTCTTGTGGAGAGCCAGACTTCTCTTCCT
CACACCCACTCTGGGCAACTCACAGTCACGTCTAACTCCAGCTCAGTGGA
TCCAACACCCACTTCTGGCCTCACTGGGCACCTGTATAGATATGGCAAAC
ACACACTCATGATAATAAATTAAAAAATTAATACTAAAAAGAGTGTAAGA
GCCAGAGAGGATGGAGAACATGAGGAGAAAGAGTCAGCTGAGGAAAGCTC
ACATGAACTCACAGAGACTGAAGCAGCAAGCACGGGGCCAACCTGGGTCT
GCACCAGGGCCTCTGTGCTTATATCATGGCTTCCAGTTTAGTAATTTTAT
GGGACTCCTGAATGTGTAAACAAGTGCCTGCTCTTGGG
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCAGCAAAAGAATCTTGAATGGCTGAGA
AGCACCTGAAAAACTGTTCACCATCCTTAGTCATCAGGGAAATGCAAATC
AAAACGACTCTGAGATTCCACCATACACCCATCAGAATGGCTAAGATCAA
AAACTGAAAGGACATGCTGCCAAGGTTGTGGAGCAAAGGGAACACTCCTC
CATTGCTGGTGGGAGTGTGAACTTCTACAGTCTCTGTGGAAATCCATCTG
GTGGTTCCTCGGAAAACTGTTTTTTTGTGCTACCTCAAGACCCACCTATA
CCATTCCTGTTGAGTGACTCCCAGNACGTAAACCACNTTATAAGATTAGT
TGGTTAATTATATTCNTNGCNGATAAATTGATNTNTAACGGAAGGGGGGG
GGGGGCTAGATGTCTCTCATCTGAGGAATGGATACAGAAAATGTGATATA
TCTACTCATAGGAATACTTATCAGCCCTTGAAAACAAGGACATCTTGAAT
TTTGCAGGTAAAGGGTCAGAAATTGCATAAATCTTCCTGATTGAGGCTTC
CCATATCTCAATTTAACATTTTAGAGTTAATACTCACTGATAACCGGCAC
ATTTAGTCCCTTATGTTCTCTATTTATCCTTGTAAGCGCGGTTGTAATTA
TATTGACACCTTAATATTGGCATTTTTCTCTTTTTTCAAGTGAAAGGGAT
ACTTCGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_m06.b1 MSMg01no302_m06.b1 CHROMAT_FILE:
MSMg01no302_m06.b1 PHD_FILE: MSMg01no302_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:29 2005
         (332 letters)



>mm_chr1_168744481_168745212
          Length = 732

 Score =  540 bits (279), Expect = e-158
 Identities = 303/311 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaaggctgccgtggcattagtcaacttgatagcttatgtattttgtttaaaaa 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 515 gaattccaaaggctgctgtggcattagtcaacttgatagcttatgtattttgttttaaaa 456

                                                                       
Query: 65  attgctatttatatcttgcttatagtatgggagatgtttcagattgtaaaaacagagatt 124
           ||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 455 attgctattcatattttgcttatagaatgggagatgtttcagattgtaaaaacagagatt 396

                                                                       
Query: 125 atttctcaatggaagagcaacagaaaagttgtaagttagtacaattagttatattttcct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 atttctcaatggaagagcaacagaaaagttgtaagttagtacaattagttatattttcct 336

                                                                       
Query: 185 aaaccttttgtagcattaggtatttctttattcctacactttaacattattttaaatatg 244
           |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 335 aaaccttttgtagcattaggtatttctttattcccacacttttacattattttaaatatg 276

                                                                       
Query: 245 tctataagttttcctagttgaaaaagaagagtatttgtgtggaaggggtgtcaagagagc 304
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tctgtaagttttcctagttgaaaaagaagagtatttgtgtggaaggggtgtcaagagagc 216

                      
Query: 305 actaggcaggt 315
           |||||||||||
Sbjct: 215 actaggcaggt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)