BAC Information

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BAC

Clone NameMSMg01-302M20
Chromosome1 (Build37)
Map Location 25,531,547 - 25,531,817
singlet/doubletsinglet
Overlap geneBai3
Upstream geneCol19a1, LOC100040475, LOC665829, Lmbrd1, 4930472D16Rik, LOC669171
Downstream geneLOC665595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302M20.T7 (MSMg01no302_m20.b1)MSMg01-302M20.TJ (MSMg01no302_m20.g1)
ACCAG428590AG428591
length734730
length of high quality
(start - end)
322 (44 - 365)291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no302_m20.b1 PHD_FILE: MSMg01no302_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:31 2005CHROMAT_FILE: MSMg01no302_m20.g1 PHD_FILE: MSMg01no302_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTCAAACATTAATCCTGCTGTGTCAGGAGGACACAGTATGCTGGGA
GTCCTCATGCCCTCTGGTTCTTACTGTATCTCTGCTTTCTCTTCGGCATT
AGTACCTGAGCCCCGAGGAGAAGTTAGGAAGAAGGCAATCTATTTAGGAC
TGACTGCCCCCAAAGCTCTCACTTGTCCAACAGTGAGTCTCTGTGTCAGT
TCTCAACTACTGCTGGTTATTTGCTTAGCTGTTACTTTGTGAGTTTGTGT
TTTAAAGCCAGAGGGAAAGAGATGCATGGAGTAGGGTGGGCAGGCATGTG
GAAAGGAGCTGATAGTTTTTGGCCCCCCCCCCCACGTAGGATCAGCATGC
ATTGTACAACATTTTTTAGTTCAATTTAAAAAATGACAGACATTTTATAA
CATATACACTATAGTGTGGCAGGACAGATGAAGAGGTTATCTTCCAGCTT
TACATTTTTTTTTGGTGTTGGGTTCTTCANATAGAAATTCTTGGGCTTTG
AGCAAACTTGGAAATCAAGGTCTGCTGTCTCTGACTCTAGGCTCATGCTA
GTTAATTTTAGAGTCAAGTGATCTCCTCTAGCGTCTTCTGATGGGTGTAA
AGCGAAATTTCTCGCATTAATATTTTTCTTCTTCTAACCTTTGCTTTCCT
TAGGCATTTGAATTATGATGTGGGTTTCTTCATA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTCTTCTCAATCTGGCTTATTTTGC
TTAGCATATATATCCAGCTCCATAGATTTTCTTTAAAATGATTTGATTTC
ATTTTTAAAATTACTTTATTTATTTTTATTCCAGGCTTCGCTCGCACACA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACGTTCCCTGTAATGGTCCAGCAGAGGCAGTGGCTGATTTGATATGT
GTATCCATCCAGCGGTCTCCGTACTCCTCCCTGTTCCTTCCTCCGAGAAA
TAACAGCATATTCTTTTTTTTTTACCACTTCATCCCGCAGTAGGCCTGGA
AATCTGCCAGTAGACCCTGCCCTGACAAGACAGAAAGACACGCAGGCTTT
CACGATAGCATGCAAAGTGGCTCCTGAACGTCTCCCCTCCCATAGTTCCT
CATCCCATTCTTCCTTCCTCTTGCCTCCAAGAGGGTGCTCCCCGCATCAG
ACCCCCCCTCTTCCTTCTATTTAACGGCGTGCGCATGTGTATGTTTGTGT
GTGTGTGTGTGTGTGTGTGCGTGTGCGCGAGCGAGAGCCCACCTTTTAAC
CCTTATCTCTTACTCTTTTTTCCCCTACAACTAACAATACATTTCTTACC
TTTCTACTATGACTAACCCTTCGTCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_m20.g1 MSMg01no302_m20.g1 CHROMAT_FILE:
MSMg01no302_m20.g1 PHD_FILE: MSMg01no302_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:31 2005
         (291 letters)



>mm_chr1_25531165_25531855
          Length = 691

 Score =  474 bits (245), Expect = e-138
 Identities = 270/289 (93%), Gaps = 18/289 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcttctcaatctggcttattttgcttagcatatatatccagctccatagattttcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 agtcttctcaatctggcttattttgcttagcatatatatccagctccatagattttcttt 594

                                                                       
Query: 61  aaaatgatttgatttcatttttaaaattactttatttatttttattccaggcttcgctcg 120
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||    |||
Sbjct: 593 aaaatgatttgatttcatttttaaaattattttatttatttttattccaggct----tcg 538

                                                                       
Query: 121 cacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct: 537 cacacacacacacacacacacacacacacacacacacacacacacaca------------ 490

                                                                       
Query: 181 cgttccctgtaatggtccagcagaggcagtggctgatttgatatgtgtatccatccagcg 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 --ttccctgtaatggtccagcagaggcagtggctgatttgatatgtgtatccatccagcg 432

                                                            
Query: 241 gtctccgtactcctccctgttccttcctccgagaaataacagcatattc 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gtctccgtactcctccctgttccttcctccgagaaataacagcatattc 383



 Score = 83.9 bits (43), Expect = 1e-20
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                          
Query: 122 acacacacacacacacacacacacacacacacacacacacacacaca 168
           ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 114 acacacacacacacacacacacacacacacacacacaaacacacaca 160



 Score = 83.9 bits (43), Expect = 1e-20
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                          
Query: 124 acacacacacacacacacacacacacacacacacacacacacacaca 170
           ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 114 acacacacacacacacacacacacacacacacacacaaacacacaca 160



 Score = 83.9 bits (43), Expect = 1e-20
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                          
Query: 126 acacacacacacacacacacacacacacacacacacacacacacaca 172
           ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 114 acacacacacacacacacacacacacacacacacacaaacacacaca 160



 Score = 83.9 bits (43), Expect = 1e-20
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                          
Query: 128 acacacacacacacacacacacacacacacacacacacacacacaca 174
           ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 114 acacacacacacacacacacacacacacacacacacaaacacacaca 160



 Score = 83.9 bits (43), Expect = 1e-20
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                          
Query: 130 acacacacacacacacacacacacacacacacacacacacacacaca 176
           ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 114 acacacacacacacacacacacacacacacacacacaaacacacaca 160



 Score = 83.9 bits (43), Expect = 1e-20
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                          
Query: 132 acacacacacacacacacacacacacacacacacacacacacacaca 178
           ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 114 acacacacacacacacacacacacacacacacacacaaacacacaca 160



 Score = 83.9 bits (43), Expect = 1e-20
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                          
Query: 134 acacacacacacacacacacacacacacacacacacacacacacaca 180
           ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 114 acacacacacacacacacacacacacacacacacacaaacacacaca 160



 Score = 81.9 bits (42), Expect = 4e-20
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                         
Query: 136 acacacacacacacacacacacacacacacacacacacacacacac 181
           ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 114 acacacacacacacacacacacacacacacacacacaaacacacac 159



 Score = 81.9 bits (42), Expect = 4e-20
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                         
Query: 121 cacacacacacacacacacacacacacacacacacacacacacaca 166
           |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 115 cacacacacacacacacacacacacacacacacacaaacacacaca 160


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 49
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 15
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)