BAC Information

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BAC

Clone NameMSMg01-302O08
Chromosome1 (Build37)
Map Location 35,768,833 - 35,769,064
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgef4, BC043098, Plekhb2, LOC666261
Downstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302O08.T7 (MSMg01no302_o08.b1)MSMg01-302O08.TJ (MSMg01no302_o08.g1)
ACCAG428650AG428651
length741756
length of high quality
(start - end)
234 (129 - 362)291 (72 - 362)
definitionCHROMAT_FILE: MSMg01no302_o08.b1 PHD_FILE: MSMg01no302_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:38 2005CHROMAT_FILE: MSMg01no302_o08.g1 PHD_FILE: MSMg01no302_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGTCA
TTCTCTTGGATACATTTCACTGCAGCCTCCATCCACATCCCTCAACACAA
CAGCACATGGACTCATTACACCGACAAGTAGGGTCAGCAAAATGGCTTAA
CTAGAAATCTACAAGGCACTTACCAGGAACAACAGCAACCACAAACCCAC
CATGAAAGTTGTGACTGATCAACTCAAGAAACTACAGCAGGGCATGGTCA
CAAAAACAAAGGTAATGGAGTAATACTGGACAAAGTATAGTTTAGATTTT
TTAGGGTTGGAATAAGCCTTCCTGTTATTTCTGGAGTGGAGCCAGGAAGC
CAGGCAGTAGTCTTTCTGGGCCCACCCCCCATAGGAGCTCACAGAAGCCA
CCAATAGTCTCAGCTCCCATCACCCCCTGAATCAAGACATTGCAGGTCAA
GAATTATAATTATTTGGAAAGAACCGTACATCAGCCATTTGTTCAGTTTG
TTCAGTAAAAGCAGTTTGTTGATGCACTCAACAGAACCAGATGAAATTAC
AGACTACAATCTGAAGCTATAATGCATGCGTTAGCATATTTCACCCAGAA
ATGACATGATACAACAATGTCTGTTAAAGATTTGAAGATGATTTGTTGGA
GTCTAAAGTTTTTGTGACAAGCTATGTAAAAATATGGAATTTGAATCTGA
AAGAAAAACCACACTGTGGTTTTATAGTCCTAAACTCACAG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTTTAGCTCAGGACCCCATTTTTTAATT
GTGTTATTTAGTCATTCACATTTAACTTCTTCAGTTTTTCATATATTGTG
AATATTAGCCCTCTGTCAGATGTAGGGTTAGTGAAAATCTTTTCCCATTC
TGTAGTCTGCTGTTTTGTCCTATTGACAGTGCCCTTTGTCTTACAGAAAC
ATTTCAATTCCATGAGTTCTCATTTACCAATTGTTGATCTGGGGGCCTGA
GCCATTGGTGTTCTGTTCATGTTATTCTCTCCTGTACCAATGTGTTCAAG
GCTATTTCTTTTTTAATACCNNACAGNACCCAGTTTTATGGTGAGGTTCT
TGATCCACCTGGACCTGAGTATAAAAAAAAAAATAGATGTGGAGCTATTT
GCATTCTTCTGCATGCAGGCATCTACTTACACCAGCATTGTTTGTTGATG
ATGCACCCCCCTCCAATTGTATGGCTATAGACTCTTTACTAATATTAAGC
TTCCATAGGTGGGCGGGCTTCATTTCTGGGTCTTTGATTCGATTCCATTG
ATTCAACTTTTCTGGTTTTTGTACCATTACCTTGGGACGGTCTTTTGCAT
TTTTGTTTTTTTAATTTATCTTCCTTTTTTTACAACTATTGGCTCTGGTG
CAACATTGTCGATACCTCTTAATATGTTGGACTTCTCTCTAATAATATCT
TTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_o08.b1 MSMg01no302_o08.b1 CHROMAT_FILE:
MSMg01no302_o08.b1 PHD_FILE: MSMg01no302_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:38 2005
         (234 letters)



>mm_chr1_35768633_35769266
          Length = 634

 Score =  441 bits (228), Expect = e-128
 Identities = 231/232 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagggtcagcaaaatggcttaactagaaatctacaaggcacttaccaggaacaacagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tagggtcagcaaaatggcttaactagaaatctacaaggcacttaccaggaacaacagcaa 373

                                                                       
Query: 61  ccacaaacccaccatgaaagttgtgactgatcaactcaagaaactacagcagggcatggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ccacaaacccaccatgaaagttgtgactgatcaactcaagaaactacagcagggcatggt 313

                                                                       
Query: 121 cacaaaaacaaaggtaatggagtaatactggacaaagtatagtttagattttttagggtt 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cacaaaaacaaaggtaatgcagtaatactggacaaagtatagtttagattttttagggtt 253

                                                               
Query: 181 ggaataagccttcctgttatttctggagtggagccaggaagccaggcagtag 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggaataagccttcctgttatttctggagtggagccaggaagccaggcagtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)