Query= MSMg01no303_b09.b1 MSMg01no303_b09.b1 CHROMAT_FILE:
MSMg01no303_b09.b1 PHD_FILE: MSMg01no303_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:54 2005
(412 letters)
>mm_chr1_80488208_80489020
Length = 813
Score = 746 bits (386), Expect = 0.0
Identities = 404/410 (98%), Gaps = 1/410 (0%)
Strand = Plus / Minus
Query: 4 ggaattcactgtaggtcctttttttagtacagctagatgtccaaatatctgtgcctgtct 63
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ggaattcactgtaggttttttttttagtacagctagatgtccaaatatctgtgcctgtct 421
Query: 64 tccagctaaatttatctatcactgtcagtgttccagtgcagattccttctctatggatgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tccagctaaatttatctatcactgtcagtgttccagtgcagattccttctctatggatgt 361
Query: 124 caaaacagtctctagcagatctcagattatggtttcccagcttacaaactagt-aaaaag 182
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 360 caaaacagtctctagcagatctcggattatggtttcccagcttacaaactagtaaaaaaa 301
Query: 183 aaaaaaatgcacttctccagatgtcatgcattaaattatcattcagtagatattcattag 242
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 300 aaaaaaatgcacttctccagatgtcacgcattaaattatcattcagtagatattcattag 241
Query: 243 tctgccctcattttcataagtgcttttgatattagtattggccatgtgctttgctttggc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tctgccctcattttcataagtgcttttgatattagtattggccatgtgctttgctttggc 181
Query: 303 taatggagtattagtgtatgtgacataaactagagattaagtaggcttttgcagatacag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 taatggagtattagtgtatgtgacataaactagagattaagtaggcttttgcagatacag 121
Query: 363 ttgatctctgacactttgttttcttccttcaaagactatgctttcattta 412
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ttgatctctgacactttgttttcttccttcaaagactatgctttcattta 71
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 813
Length adjustment: 9
Effective length of query: 403
Effective length of database: 804
Effective search space: 324012
Effective search space used: 324012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no303_b09.g1 MSMg01no303_b09.g1 CHROMAT_FILE:
MSMg01no303_b09.g1 PHD_FILE: MSMg01no303_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:54 2005
(461 letters)
>mm_chr1_80314850_80315710
Length = 861
Score = 853 bits (441), Expect = 0.0
Identities = 456/461 (98%)
Strand = Plus / Plus
Query: 1 gacaaagctacaaggatacttctgaggcactcacaaactagtatgtaaaactccttaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacaaagctacaaggatacttctgaggcactcacaaactagtatgtaaaactccttaaat 260
Query: 61 acagaaaacatcaggaatactttttagctgtattgtcattccttaggaaaggagagaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagaaaacatcaggaatactttttagctgtattgtcattccttaggaaaggagagaata 320
Query: 121 tatctgtgagaaactgatgttttcatgcttactaaaatacggcatttttcttatgggaag 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 tatctgtgagaaactgatgttttcatgcttactaaaatacggtatttttcttatgggaag 380
Query: 181 acacaaagactaatatcccatgttctgctttgtgtgaatttctttggggctcagtttcct 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 acacaaagactaatatcccatgttctgctttgtgtgaatttctttggggctcaggttcct 440
Query: 241 agcaggaaatattctagagatagaacacacaaccagtgctagactagagatagtacttgg 300
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 agcagggaatattctagagatagaatacacaaccagtgctagactagagatagtacttgg 500
Query: 301 attatttgcgcctttttttctattttggaaacatttcttaaattaataatcaactacttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attatttgcgcctttttttctattttggaaacatttcttaaattaataatcaactacttt 560
Query: 361 ggaaacatttcttaaattaataatcaactactttaataattaaaatagtaattataaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaaacatttcttaaattaataatcaactactttaataattaaaatagtaattataaatt 620
Query: 421 ttgtcattgtaatatagttaacaatcaaattaataatagta 461
||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtcattgtaatatagttaacaatcaaattaataatagta 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
