TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCCAGAAGGCCAGGCTGGCTGGCCAGTGAGCCCCAGGGATGATTCA
CCTGTCTCTGCCTCTATAGTGCTGGGATTACATGCATGCTACCATGTCTG
CTTTCAGAAACAGCATCCCTCTGTGGTCTCAGCCATTATTCCTGCTTCCA
GCTTCCCACTTGAGCTCCTGCCCTGGTTTCTCTTGATGATGGTCAGTAAG
CTGTCAGCCAAATAAACCCTTTCCTCCCCCAAGATGCTTCTGGTCGTGGT
ATTCCTCACAGCAACAAAGTGCTAACTAGGGCAAGATCCATAAAGGTAAA
TGTGTATATGTGGGTCAGCTGCACCTGATAAAGTCACGTGGGTGAGGCTG
TGGTGTTCCACGAAGGAAAAGGAAATCCAGGTTAAACCTGGTCTGGTCCT
GGATTCACGGCAGAATGATATAACACTTTTCAGAAACATAAAGTTAAAAA
AGAAATACTGAAAGCTGGAGTGATGGACTGATGGCTCAGTGGTTAAGGGC
ATATTGCTCTTCCAGAGGCCCTGAGTTCAGTTCCCAGCACCCATCCTGAG
TATCCCACAACTACCTGCAACTCCAGCCCCAAACAGAACTTAAAACCTCA
AGTCTCCAGGCACACCTGCACCAACATGCGTGCAGAGATGTCCTCCCAGA
CACTTAATTATAAATAATTTCTAAAAGATCTAATAATATG

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAGCATTTCGCTCCAGCCACCACAT
CCCCAGCTGTGACGATTCTCTGCAAATATAAGTCCAAATAAAATTCCTTC
TATAAGTTGCCATGGTCATGGTGCTTTATCACAGCAAGAGAAATTAATAC
AGTGTTCAACTTGATCCCACTGACAAGACTTGTTTTAGAGGTTTACTCTT
GCTTAATTATGAAAACTAAAATTATCTGTAGGTCAGAAAGCAACAATACA
ACTGCAAGGAATATAATCTACATAAACATCAGCAAAGCAATTGTGGGCTG
GAGGTGTGTGTTGGTAGAGTGCTCATCTATCCAGTATGCACCAGCCTTGG
GTTTGACCATATAAACCAGGCATGGTGGCACATACCAGCAATTTCAGCAT
CTTAGAGGGAGAATCACAAAACAAGTATGAGAAAAAGCTTGGGCTACACA
GTAAGTTATAGATAGCCTGGATACAAGAGTCCTTTACCTGAACCTTAGCC
TTCCTTCCTAGAGAGAAGAAGACTGGAAAGGTACATAGGGTGCAAATAAC
AGAAGGTGGCACAATGACAATGACTGTTCATGACAGTGGTTACTATATAA
GAATAGAAGGCTGGCCTGGGAGTATATTCACAGAAAATGCTTGCCTACCA
ATGTAAGGTCCTGGATTTGATCACAATATTGTAATAGATGN

Query= MSMg01no303_c11.g1 MSMg01no303_c11.g1 CHROMAT_FILE:
MSMg01no303_c11.g1 PHD_FILE: MSMg01no303_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:59 2005
         (650 letters)



>mm_chr1_181701986_181703034
          Length = 1049

 Score = 1187 bits (614), Expect = 0.0
 Identities = 639/650 (98%), Gaps = 6/650 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagcatttcgctccagccaccacatccccagctgtgacgattctctgcaaatataagtc 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagcatttcgctccagccaccacacccccagctgtgacgattctctgcaaatataagtc 260

                                                                       
Query: 61  caaataaaattccttctataagttgccatggtcatggtgctttatcacagcaagagaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaataaaattccttctataagttgccatggtcatggtgctttatcacagcaagagaaat 320

                                                                       
Query: 121 taatacagtgttcaacttgatcccactgacaagacttgttttagaggtttactcttgctt 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 taatacagtgttcaacttgatcccactgaca-gacttgttttagaggtttactcttgctt 379

                                                                       
Query: 181 aattatgaaaactaaaattatctgtaggtcagaaagcaacaatacaactgcaaggaatat 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aactatgaaaactaaaattatctgtaggtcagaaagcaacaatacaactgcaaggaatat 439

                                                                       
Query: 241 aatctacataaacatcagcaaagcaattgtgggctggaggtgtgtgttggtagagtgctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aatctacataaacatcagcaaagcaattgtgggctggaggtgtgtgttggtagagtgctc 499

                                                                       
Query: 301 atctatccagtatgcaccagccttgggtttgaccatataaaccaggcatggtggcacata 360
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atctatttagtatgcaccagccttgggtttgaccatataaaccaggcatggtggcacata 559

                                                                       
Query: 361 ccagcaatttcagcatcttagagggagaatcacaaaacaagtatgagaaaaagcttgggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccagcaatttcagcatcttagagggagaatcacaaaacaagtatgagaaaaagcttgggc 619

                                                                       
Query: 421 tacacagtaagttatagatagcctggatacaagagtcctttacctgaaccttagccttcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tacacagtaagttatagatagcctggatacaagagtcctttacctgaaccttagccttcc 679

                                                                       
Query: 481 ttcctagagagaagaagactggaaaggtacatagggtgcaaataacagaaggtggcacaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttcctagagagaagaagactggaaaggtacatagggtgcaaataacagaaggtggcacaa 739

                                                                       
Query: 541 tgacaatgactgttcatgacagtggttactatataagaatagaaggctggcctgggagta 600
           |||||||||||||||||||||||||||||||||||||||     ||||||||||||||||
Sbjct: 740 tgacaatgactgttcatgacagtggttactatataagaa-----ggctggcctgggagta 794

                                                             
Query: 601 tattcacagaaaatgcttgcctaccaatgtaaggtcctggatttgatcac 650
           |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tattcacagacaatgcttgcctaccaatgtaaggtcctggatttgatcac 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1049
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1039
Effective search space:   664960
Effective search space used:   664960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)