NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTAGGCAAACTGATGGATCTGGAGGATATTATCCTGAGTGA
GGTAACCCAATCACAAAGGAACTCACATGATATGCACTCACTGATAAGTG
AATATTAGCCCAGAAACTTAGAATACCCAAGATATAATTTGCAAAATACA
TGAAACTCAAGAAGGAAGACCAAAGTGTGGATACTTTGTTCCTCCTTAGA
ATAGGGAACAAAACACCTATGGAAGGAGTTATAGAGACAAAGTTTGGAGC
TGAGATGGAAGGAAGGACCATCCAGAGACTATTCCACCTGGGGATCCATC
CCATTATCAGCCACTGAACGCAGATACTATTGCACATGCTATCAAGATTT
TGCTGACAGGACCCTGATATAATTGTCTCTTGTGAGGCTATGCAAGTGGC
TGGCAAATACAGAAGTGGATGCTCACAGTCATCTATTGGATGGAACACAG
GGCTCCCAGTGCAGAAGCTAGAGAAAGTATCCAAGGACCTAAAGGGGTCT
GCAGCCCTATAGGAGGAACAACAATATGAACTAATCAGTACCTCCAAAGC
TCATGTCTCTACCTGCATATGTAGCAGAATATGGCCTAGTCGGCCATCAT
TGTGAAGAGAGGCCCTTGAACTTGAGATCAGATACCACAGTACAGGAGAA
TGCAAGGGTCAGGAAGTAT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAACGTTTTGGAGAAAATAA
TATCTACATAGGCAACTGTGTGCATCCAAGTTCAGTTAACAATTTGGGTG
TTTTTGAAATTAAGTATTTAGTGTCTTTAGTATCTTTAGAGGTATGTTAT
AATGTTAATATCCAAGTTAGCTGAATGGATACCTAAGTCCATAAATATAA
AATTTATATGTCATATGATATAGCTAATATGGTAGTGAAACATGAACTGA
AATGTTGTTTCAGAACTCTAATTTCCATGACATCATCAGCAAGAATTCTA
TTTATGATATTTTTTTGACTGAGGCAGGGTCTCATGTATTGTAAACTGGT
TTCAAATTCCTTCTGTAGCCAAAGAGAGAGGGACTCTTCTAAACTGTACA
ACTGTGAGTTAGCTGGAAAAAATGTATGTTAATGCCTTATTCTGATCTAA
CTCTTCTACATGTGCCAATGTTTGCCACAACTACTTGTATAAATAATTTT
AGAAGATTGTTAGTGATGGTCTTAATCGGTTTCCTCTGTTTCATAAAAAT
GAAGTCTGTTTTTGTTAACTACTCTGATAACTAAGAATACAAGCACCTGC
CCAAGTCATAAGTATCTGCATCATGTGGTCCAGTCATCAGTATCTACAGC
ATATGGCCTAGTCGTCAGTATGT

Query= MSMg01no303_f12.g1 MSMg01no303_f12.g1 CHROMAT_FILE:
MSMg01no303_f12.g1 PHD_FILE: MSMg01no303_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:14 2005
         (645 letters)



>mm_chr1_28269320_28270364
          Length = 1045

 Score =  940 bits (486), Expect = 0.0
 Identities = 495/498 (99%)
 Strand = Plus / Minus

                                                                        
Query: 148  tggatacctaagtccataaatataaaatttatatgtcatatgatatagctaatatggtag 207
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1045 tggatacctaagtccataaatataaaatttatatgtcatgtgatatagctaatatggtag 986

                                                                        
Query: 208  tgaaacatgaactgaaatgttgtttcagaactctaatttccatgacatcatcagcaagaa 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985  tgaaacatgaactgaaatgttgtttcagaactctaatttccatgacatcatcagcaagaa 926

                                                                        
Query: 268  ttctatttatgatatttttttgactgaggcagggtctcatgtattgtaaactggtttcaa 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925  ttctatttatgatatttttttgactgaggcagggtctcatgtattgtaaactggtttcaa 866

                                                                        
Query: 328  attccttctgtagccaaagagagagggactcttctaaactgtacaactgtgagttagctg 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865  attccttctgtagccaaagagagagggactcttctaaactgtacaactgtgagttagctg 806

                                                                        
Query: 388  gaaaaaatgtatgttaatgccttattctgatctaactcttctacatgtgccaatgtttgc 447
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 805  gaaaaaatgtatgttaatgccttattctgatctaactgttctacatgtgccaatgtttgc 746

                                                                        
Query: 448  cacaactacttgtataaataattttagaagattgttagtgatggtcttaatcggtttcct 507
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 745  cacaactacttgtataaataattttagaagatcgttagtgatggtcttaatcggtttcct 686

                                                                        
Query: 508  ctgtttcataaaaatgaagtctgtttttgttaactactctgataactaagaatacaagca 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685  ctgtttcataaaaatgaagtctgtttttgttaactactctgataactaagaatacaagca 626

                                                                        
Query: 568  cctgcccaagtcataagtatctgcatcatgtggtccagtcatcagtatctacagcatatg 627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625  cctgcccaagtcataagtatctgcatcatgtggtccagtcatcagtatctacagcatatg 566

                              
Query: 628  gcctagtcgtcagtatgt 645
            ||||||||||||||||||
Sbjct: 565  gcctagtcgtcagtatgt 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)