BAC Information

Click to search

BAC

Clone NameMSMg01-303H24
Chromosome1 (Build37)
Map Location 45,778,281 - 45,778,453
singlet/doubletsinglet
Overlap genenone
Upstream geneGulp1, LOC100041738, LOC100041752, LOC383640, Col3a1, Col5a2, EG666799, LOC631429, LOC666814
Downstream geneEG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303H24.T7 (MSMg01no303_h24.b1)MSMg01-303H24.TJ (MSMg01no303_h24.g1)
ACCAG429078AG429079
length747743
length of high quality
(start - end)
---172 (572 - 743)
definitionCHROMAT_FILE: MSMg01no303_h24.b1 PHD_FILE: MSMg01no303_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:26 2005CHROMAT_FILE: MSMg01no303_h24.g1 PHD_FILE: MSMg01no303_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAAT
TCTCTGGTTATTCCCTTTGCAGTGTACACCCAGATGTGGGTAGACTGATT
GATGGCCAGCTATAATGCCCATCGGATGTGCTGCGGATTCGAGAGCTTAG
CTTGTCCTGGTCTCATGCTCTACACCCCTGCCCAGTTCCATTAGGCTATC
CAATTCTCTAAAACTACTTTCTTCTTCGCTCTCCACTCCTTAGTCTAAAC
CCTTACTCCCTTGCTCCACAATTGTTGATTCCCCTTCTCCAGGTGCCTAT
GCCAACTTCCCCATAGACCTAAATAACTGTGTGAAGTGTGCCCCTATGAC
CGCCCCAGGACTACTCCCATTTTCTTTTTGCTGAATTTAAAACTTGAACC
AGTAAACCATTAACTGATCTGCTATGCAAGTGACTGCGTGTACAAATAGA
AACTCACAGCGTATGCTAACGTGCCAGAAGAAACATGCCCATTTCTTTGG
AAGAATGGAAAGAGAATCCTGCAGATGCCTTCTAAACTCTGGCCTCTGTT
TCTTCCAGACTGATAACTCATGGAACTCTTTGAATGCTGGACTGTGTTCC
TAAGATCCTAGAATCCATCTCACTTTGTCTCTTGTTCCTAACTCTTGCTG
TCCAGTCTTCTACCTCAAGTATTCGTTTGCTGAGACTTTCTGAAGCCAAA
CATGCCCCGCAATGCATTCCTGATGAGATCCTAAGACCTCCCCTGCG
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGGACAGATTGTTCTATATCAGTTT
AGAGTCTTATATGGACTTGGATGATGCCATTCTGTCACTGTACATCCTGT
ATAACCACTCAAAAATGGACCCGATGTTCTGGAGCTCCTTGCAACAGAGA
TCTTTGTACATATTCCTATGAATCCTCCTCTTTTTGTCCCCCCCAGGAAT
CTATTTCCTGTCTTCATAATCGAGATATTCTCACCTTCATGACTTACTAA
CTAGTCTATCAAATCATGTTACTACCTATACTGAAAAATTATCCTCCTGA
TCCCTCATATCTTACACTAGTGGATTGCTCTGTTTCTTTTGCTCTCCTTT
GATCACTCTGCTACGCTTTGCCCACTTCATTTTTGATTCCCCAACTAGAC
TTGACGTTTCAGCTTGTGATACTCTTTTAACACTTACCGCTCTATAACTT
GATATGCTTATGGGACTTGTGTATCCTAGCTGCTTGTGCATAGATTCCGT
CATGGTTAATCCTATAGAAGATTTGTGATGTGGCTTCTAAGCTAAGTCAT
TTAATTGGCTTTTTCAAACACATCCTTTGTGCTTTTGAAACAAGATAGAA
TATGGTTGCATCGTAGTGAATCAAGACCCGTTTCCCACACATACAAATAA
GGACAGCAAGCCATGCAGCTGTGACTTCTCTGTCTAGCTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_h24.g1 MSMg01no303_h24.g1 CHROMAT_FILE:
MSMg01no303_h24.g1 PHD_FILE: MSMg01no303_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:26 2005
         (172 letters)



>mm_chr1_45778081_45778653
          Length = 573

 Score =  327 bits (169), Expect = 2e-94
 Identities = 172/173 (99%), Gaps = 1/173 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtgatgtggcttctaagctaagtcatttaattggctttttcaaacacatcctttgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtgatgtggcttctaagctaagtcatttaattggctttttcaaacacatcctttgtg 260

                                                                       
Query: 61  cttttgaaacaagatagaatatggttgcatcgtagtgaatcaagacccgtttccca-cac 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 cttttgaaacaagatagaatatggttgcatcgtagtgaatcaagacccgtttcccaacac 320

                                                                
Query: 120 atacaaataaggacagcaagccatgcagctgtgacttctctgtctagctcatg 172
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacaaataaggacagcaagccatgcagctgtgacttctctgtctagctcatg 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 573
Length adjustment: 8
Effective length of query: 164
Effective length of database: 565
Effective search space:    92660
Effective search space used:    92660
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)