Query= MSMg01no303_m20.b1 MSMg01no303_m20.b1 CHROMAT_FILE:
MSMg01no303_m20.b1 PHD_FILE: MSMg01no303_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:48 2005
(604 letters)
>mm_chr1_150599064_150600067
Length = 1004
Score = 1033 bits (534), Expect = 0.0
Identities = 587/612 (95%), Gaps = 12/612 (1%)
Strand = Plus / Plus
Query: 5 gaattcaagtgctgtccctgaactcaattgaactgtgcccattaaattattatctctcta 64
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gaattcaagtgctgtgactgaactcaattgaactgtgcccattaaattattatctctcta 252
Query: 65 tagatagatagatcgatagatagatagatagatagatagat------------gtctgca 112
||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 253 tagatagatagatagatagatagatagatagatagatagatagatagatagatgtctgca 312
Query: 113 ctgttctcttaattcacctctctttcctgtgccagtctcttaaatagcctctcatttcta 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctgttctcttaattcacctctctttcctgtgccagtctcttaaatagcctctcatttcta 372
Query: 173 tgaagtcctcttgagagtgaccatgtcaaatctttctctgattcatcactttgtgtgcct 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgaagtcctcttgagagtgaccatgtcaaatctttctctgattcatcactttgtgtgcct 432
Query: 233 atcaattagacttcactttcaaacacagttgtttctgtaactatttgtgggcactaaagc 292
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 433 atcaattagacttcactttcaaacacagttgtttctgtaactaaaggtgggcactaaagc 492
Query: 293 agcatctgtattccagctggttcacacagacctacaaggtctttgttgctgatcccttgc 352
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 493 agcatctgtattccagctggttcacacagacctagaaggtctttgttgctgatcccttgc 552
Query: 353 catagtaaccatgttataccgactgattaaaattctagtatatttgcatagatatataag 412
|||||||||||||||||| || |||||||||||||||||||||| || |||||||||||
Sbjct: 553 catagtaaccatgttatattgattgattaaaattctagtatatttacacagatatataag 612
Query: 413 tacacatttacaaattcaaaataaaattaatgaaaatttgagatccctctcatttgaaaa 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tacacatttacaaattcaaaataaaattaatgaaaatttgagatccctctcatttgaaaa 672
Query: 473 cataaataaataaatgttagactatttagaataaaaataataattttctataatatagca 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cataaataaataaatgttagactatttagaataaaaataataattttctataatatagca 732
Query: 533 atatattataaaagaatatagaatattctataatatagaatataagaatattgggaaaaa 592
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 733 atatattataaaagaatatagaatattctatactatagaatataagaatattgggaaaaa 792
Query: 593 ttaaagaaaaga 604
||||||||||||
Sbjct: 793 ttaaagaaaaga 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no303_m20.g1 MSMg01no303_m20.g1 CHROMAT_FILE:
MSMg01no303_m20.g1 PHD_FILE: MSMg01no303_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:48 2005
(667 letters)
>mm_chr1_150747652_150748718
Length = 1067
Score = 1181 bits (611), Expect = 0.0
Identities = 653/667 (97%)
Strand = Plus / Minus
Query: 1 ttaaactatgatgacattggcaagtgaccatgggaatcctttaccattcgaggattcttg 60
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 867 ttaaactatgatgacattggcaagtgaccatgggaatcctttaacatttgaggattcttg 808
Query: 61 agtcttgtgagtttgtgtgcttcatttaaacttgtaaattaaatagcacactctcaggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 agtcttgtgagtttgtgtgcttcatttaaacttgtaaattaaatagcacactctcaggat 748
Query: 121 gaaatgattcaattgaggaaataattcatagcatattcaaatatggttatgtattgaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gaaatgattcaattgaggaaataattcatagcatattcaaatatggttatgtattgaact 688
Query: 181 acctttttcagactatcctatttcactaattttattagacaatattcatacaatatagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 acctttttcagactatcctatttcactaattttattagacaatattcatacaatatagtt 628
Query: 241 ctgcttgctttagggttaggcttgactttagatttctaaaggatctcctgacttgctttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 627 ctgcttgctttagggttaggcttgactttagatttctaaaggatctcctgatttgctttc 568
Query: 301 ttttaagtaaacaacctttgccactaaacacaatacgtttcctttgggaagaaagttcct 360
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 567 ttttaagtaagcaacctttgccactaaatacaatacgtttcctttgggaagaaagttcct 508
Query: 361 gaaacaataatttcttacataaaattctttaacatctttcagacaatatcagatcaaacc 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gaaaaaataatttcttacataaaattctttaacatctttcagacaatatcagatcaaacc 448
Query: 421 tgaagatttaagtattgcatttaggaactagtctctattctcaaattttacctcctctag 480
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 447 tgaagatttaagtactgcatttaggaactagtctctattctcaaagtttacctcctttag 388
Query: 481 atttccatggtagaactaaatataaacacgtgggataaataattggtatggtactgtaag 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atttccatggtagaagtaaatataaacacgtgggataaataattggtatggtactgtaag 328
Query: 541 tactgatttctactcatacatcactttctgtttacggtgcattcctggtcatattcaaag 600
||| |||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||
Sbjct: 327 taccgatttctactcatacatcactttctgcttatggtgcattgctggtcatattcaaag 268
Query: 601 gaccgtatttgcaggttaaaatgtcattcttatgagctttgagttcctaatggcttcttt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gaccgtatttgcaggttaaaatgtcattcttatgagctttgagttcctaatggcttcttt 208
Query: 661 tctcgtc 667
|||||||
Sbjct: 207 tctcgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
