BAC Information

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BAC

Clone NameMSMg01-303N02
Chromosome1 (Build37)
Map Location 107,208,208 - 107,208,741
singlet/doubletsinglet
Overlap geneRnf152
Upstream geneLOC383546, LOC100041134, Cdh20
Downstream geneLOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303N02.T7 (MSMg01no303_n02.b1)MSMg01-303N02.TJ (MSMg01no303_n02.g1)
ACCAG429298AG429299
length740739
length of high quality
(start - end)
694 (47 - 740)576 (76 - 651)
definitionCHROMAT_FILE: MSMg01no303_n02.b1 PHD_FILE: MSMg01no303_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:49 2005CHROMAT_FILE: MSMg01no303_n02.g1 PHD_FILE: MSMg01no303_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGGCCTATCCCTAAACATGGTAAAAGCAATCTACAGCAAACCA
GTAGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAA
ATCAGGGACTAGACAAGGCTGCCCACTTTCTGCCTACCTCTTCAACATAG
TACTGGAAGTCCTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGG
ATACAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGATAT
GATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACC
TGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAG
TCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAG
GGAAACAACACCCTTCTCAGTAGTCACAAATAATATAAAATATCTTGGCG
TGACTCTAACTAAGGAAGTGAAAGATCTTTATGATAAGAACTTCAAGTCT
CTGAAGAAAGAAATTAAAGAAGATCTCAGAAGTTGGAAAGATCTCCCATG
CTCATGGATTGACAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAG
CAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCGTC
AACGAATTAGAAAGAGCAATCTGCAAATTCATCTGGAATA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGCTCAGAACACAGGTGAAAGAG
AACCTGGTGTGTATTTATAAATCCACCACTGGAGAGACAGAGACATGTGG
ATTCCTGGGGCAGTCTGGGCAACTGACTAAACTCAATCTATAAGCACCAA
ATGAGAGAGATTCTCTCTTAAAAACAAGGTAGATGATACCTAAAGTATGA
CAGTAGAGGTCTCCTGGTCTACACACACACACACACACACACACACACAC
ACACACACACACACACACACACATATATACACACACACACACGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGACAGAGACAGA
GACAGAGAGACAGAGAGAGACAGAGAGAGACAGAGACAGAGAGAGACAGA
GAGAGACAGAGAGAGACAGAGACACAGAGAGACAGAAACAGAAACAGAGA
CAGAGCCCTCCCAAGGCAGCATAGGGAGAATAGGACTAAAAACTTGGTCT
CTTGCCCAGAATGTGTGAGGTTTTAGTTTAATTCTTAGCACTGGAAAATA
AAAGAAGCCTAATACAAGAAACAGAGTAGAAACCCCCCACAAGATCCCAA
CCTCAGTCCAGTCTGTGTTTAGTTCTGCCAGAAGTGTATCACATTCATTT
GTTATTCTCTGAATCAGCAATAACACTTAGGACAGGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_n02.g1 MSMg01no303_n02.g1 CHROMAT_FILE:
MSMg01no303_n02.g1 PHD_FILE: MSMg01no303_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:49 2005
         (576 letters)



>mm_chr1_107207966_107208941
          Length = 976

 Score =  909 bits (470), Expect = 0.0
 Identities = 530/576 (92%), Gaps = 42/576 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgctcagaacacaggtgaaagagaacctggtgtgtatttataaatccaccactggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 catgctcagaacacaggtgaaagagaacctggtgtgtatttataaatccaccactggaga 302

                                                                       
Query: 61  gacagagacatgtggattcctggggcagtctgggcaactgactaaactcaatctataagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gacagagacatgtggattcctggggcagtctgggcaactgactaaactcaatctataagc 362

                                                                       
Query: 121 accaaatgagagagattctctcttaaaaacaaggtagatgatacctaaagtatgacagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 accaaatgagagagattctctcttaaaaacaaggtagatgatacctaaagtatgacagta 422

                                                                       
Query: 181 gaggtctcctggtctacacacacacacacacacacacacacacacacacacacacacaca 240
           |||||||||||| ||            |||||||||||||||||||||||||||||||||
Sbjct: 423 gaggtctcctggcct------------acacacacacacacacacacacacacacacaca 470

                                                                       
Query: 241 cacacacatatatacacacacacacacgagagagagagagagagagagagagagagacag 300
           |||||||||                    |||||||||||||||||||||||||||||||
Sbjct: 471 cacacacat--------------------gagagagagagagagagagagagagagacag 510

                                                                       
Query: 301 agacagagacagagacagagacagagacagagagacagagagagacagagagagacagag 360
           ||||||||||||          ||||||||||||||||||||||||||||||||||||||
Sbjct: 511 agacagagacag----------agagacagagagacagagagagacagagagagacagag 560

                                                                       
Query: 361 acagagagagacagagagagacagagagagacagagacacagagagacagaaacagaaac 420
           | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 agagagagagacagagagagacagcgagagacagagacacagagagacagaaacagaaac 620

                                                                       
Query: 421 agagacagagccctcccaaggcagcatagggagaataggactaaaaacttggtctcttgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagacagagccctcccaaggcagcatagggagaataggactaaaaacttggtctcttgc 680

                                                                       
Query: 481 ccagaatgtgtgaggttttagtttaattcttagcactggaaaataaaagaagcctaatac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccagaatgtgtgaggttttagtttaattcttagcactggaaaataaaagaagcctaatac 740

                                               
Query: 541 aagaaacagagtagaaaccccccacaagatcccaac 576
           ||||||||||||||||| ||||||||||||||||||
Sbjct: 741 aagaaacagagtagaaaacccccacaagatcccaac 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 183
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)