Query= MSMg01no304_b01.b1 MSMg01no304_b01.b1 CHROMAT_FILE:
MSMg01no304_b01.b1 PHD_FILE: MSMg01no304_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:12 2005
(735 letters)
>mm_chr1_128575118_128576252
Length = 1135
Score = 1259 bits (651), Expect = 0.0
Identities = 686/703 (97%), Gaps = 11/703 (1%)
Strand = Plus / Minus
Query: 1 tctcacttgaatgaagtccaccattctccacgttaaattgatcctttagaaaagttagct 60
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 696 tctcacttgaatgaagtccaccattctccatgacaaattgatcctttagaaaagttagct 637
Query: 61 ttgccattgttaatattaaccacatagttattaacatcagagatgatcaaattgagcaat 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 636 ttgccattgttaatattaaccacatagttattaacatcagggatgatcaaattgagcaat 577
Query: 121 gtgtgtgtgtgtacatatatgtg----tatatatatacacacatatatatacacacacac 176
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 576 gtgtgtgtgtgtacatatatgtgtatatatatatatacacacatatatatacacacacac 517
Query: 177 tcctaatgagcactaaatatgtagataacataatagttttgattacatgactaaatgaaa 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tcctaatgagcactaaatatgtagataacataatagttttgattacatgactaaatgaaa 457
Query: 237 aaattcttgattactagattttctatattctaagttaaaaaaattgtccaaatcatctaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aaattcttgattactagattttctatattctaagttaaaaaaattgtccaaatcatctaa 397
Query: 297 gttctaatatggtgtatgtttaatcctcttgttatgtgacatttcatggggacatgccat 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gttctaatatggtgtatgtttaatcctcttgttatgtgacatttcatggggacatgccat 337
Query: 357 atgtctattcagtccatgtagggaaccagaaacaaagtaataccactaacatctagtttg 416
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 atgtctattcagttcatgtagggaaccagaaacaaagtaataccactaacatctagtttg 277
Query: 417 atgggcctttgagttcagtgttgctacttgcaggaatatggatgaaggattaattatagg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 atgggcctttgagttcagtgttgctacttgcaggaatatggatgaaggattaattatagg 217
Query: 477 agcacagactattctaaggcatctatatcacagaaagttcttccaacaaaggtaatgaat 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 agcacagactattctaaggcatctatatcacagaaagttcttccaacaaaggtaatgaat 157
Query: 537 gacttgtgggtgctataatgctatagctctctgcaaggtttccaggcagctccacagatg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gacttgtgggtgctataatgctatagctctctgcaaggtttccaggcagctccacagatg 97
Query: 597 gaagagtctctgaaggctcatcttcagatgaccttattgattgcatatctttggggaata 656
|||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 gaagagtctc------c-cctcttcagatgaccttattgattgcatatctttggggaata 44
Query: 657 gggtatttgtgtatatttggcaagttttaggaacttcctgagt 699
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 gggtatttgtgtatatttggcaagttttaggaacttcctgagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 735
Length of database: 1135
Length adjustment: 10
Effective length of query: 725
Effective length of database: 1125
Effective search space: 815625
Effective search space used: 815625
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_b01.g1 MSMg01no304_b01.g1 CHROMAT_FILE:
MSMg01no304_b01.g1 PHD_FILE: MSMg01no304_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:12 2005
(772 letters)
>mm_chr1_128415693_128416864
Length = 1172
Score = 1394 bits (721), Expect = 0.0
Identities = 760/773 (98%), Gaps = 2/773 (0%)
Strand = Plus / Plus
Query: 1 taacctttagagacatggatgccaaaacttctgccggaaaatataaactgacatcactgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taacctttagagacatggatgccaaaacttctgccggaaaatataaactgacatcactgt 260
Query: 61 tacagagagcatggaggaatatctgggaatatctgggaatatctgggatgaggtcatttt 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 tacagagagcatggaggaatatctgggaatatctgggaatgtctgggatgaggtcatttt 320
Query: 121 atgtccgtttccatttcctttgggaaagcatacaaatccagagaatgaaagcaagttatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtccgtttccatttcctttgggaaagcatacaaatccagagaatgaaagcaagttatg 380
Query: 181 ttaattgtaaatactcttttcttttagagtagggatcacagctaaaccaaagagcaaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaattgtaaatactcttttcttttagagtagggatcacagctaaaccaaagagcaaagg 440
Query: 241 agaacttctaggtttcaagaattttgttaaaactctttgatggctagaagggaggtgcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaacttctaggtttcaagaattttgttaaaactctttgatggctagaagggaggtgcct 500
Query: 301 ctggcctctttttctaacaggttctgtacatgttgatcaattaagtgcttcagtctttct 360
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 ccggcctctttttctaacaggttctgtaaatgttgatcaattaagtgcttcagtctttct 560
Query: 361 ggcagtgcaggaactgtgccccacgggaagcaggagttaagtgctttcccaaggcaaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcagtgcaggaactgtgccccacgggaagcaggagttaagtgctttcccaaggcaaaca 620
Query: 421 gtttgtagtcaatatcttatagattcttggaattaggtatcaaggcttcgtctgcccttc 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 gtttgtagtcaatatcttatagattcttggaattaggtatcaaggcttcctctgcccttc 680
Query: 481 agagaggggagggtggggaaacaaaatgaaacaaaaatccctagagtttcagtctgagga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agagaggggagggtggggaaacaaaatgaaacaaaaatccctagagtttcagtctgagga 740
Query: 541 catggctcattcaatgaactacttcccatgcaagcatgagaacctgagcctgcatcagca 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 catggctcattcaatgaactacttcccatgcaagcatgagaacctgagcctggatcagca 800
Query: 601 gaaactatgataagaagccagggatggtggcttgcatctgtaaactcagcactatggaag 660
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 801 gaaactatgataagaagccagggatggtggcatgcatctgtaagctcagcactatggaag 860
Query: 661 tggagaccagtggatccctggagctcactggccttaacagcccaggccaactgaggagtt 720
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 861 tggagaccagtggatccctggagctcactggccttaacagcttaggccaactgaggagtt 920
Query: 721 ccaaaccagtgagagagactgtctnggaaaa-tcaatattgacagcactgaag 772
|||| ||||||||||||||||||| |||||| |||| ||||||||||||||||
Sbjct: 921 ccaagccagtgagagagactgtct-ggaaaaatcaagattgacagcactgaag 972
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 772
Length of database: 1172
Length adjustment: 10
Effective length of query: 762
Effective length of database: 1162
Effective search space: 885444
Effective search space used: 885444
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
