Query= MSMg01no304_i10.b1 MSMg01no304_i10.b1 CHROMAT_FILE:
MSMg01no304_i10.b1 PHD_FILE: MSMg01no304_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:17 2005
(653 letters)
>mm_chr1_39751621_39752671
Length = 1051
Score = 1174 bits (607), Expect = 0.0
Identities = 641/653 (98%), Gaps = 2/653 (0%)
Strand = Plus / Minus
Query: 1 cttagaatcaggacatcggagctattaatagccaatctctgacactgtgcgttgagcctt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 cttagaatcaggacatcggagctattaatagccaatctctgacactgtgcgttgagcctc 792
Query: 61 actttcgttggctaagacatcatgacaggactttgatcccatttcagctcagtttgctaa 120
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 791 actttagttggctaagacatcatgacaggactttgatcccatttcagctaagtttgctaa 732
Query: 121 agcaaattactctaaactgagcagtttaaacacactgatgtctcatagttccaggtggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 agcaaattactctaaactgagcagtttaaacacactgatgtctcatagttccaggtggtt 672
Query: 181 ctggcgagggcgcctgctgagctgtagccagcaggctgcttttgctgatcctgggtagca 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 671 ctggcgagggcgcctgctgagctgtggccagcaggctgcttttgctgatcctgggtagca 612
Query: 241 gagccttctctgacctcatacttgtgagtgaaccagttaatgaatatccaccccaccctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gagccttctctgacctcatacttgtgagtgaaccagttaatgaatatccaccccaccctc 552
Query: 301 cagacctaaccacctcccagagttccacttctaaagtccgttcacaggttgattacaata 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 551 cagacctaaccacctcccagagttccacttctaaagtctgttcacaggttgattacaata 492
Query: 361 tcaatatagggattagaagtaactgttgctagcatatacgatctcactgacaagaaccac 420
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 491 tcaatatagggattagaaggaactgttgctagcagatacgatctcactgacaagaaccac 432
Query: 421 tttttaaaacatttgggggggggggtaactagtacccaaaagttataaagacaaaatctc 480
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tttttaaaacattt--gggggggggtaactagtacccaaaagttataaagacaaaatctc 374
Query: 481 gtggccttgtgctggaaaaatattgtctgtactcagaaagacactgggactgtgttgagg 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gtggccttgtgctggaaaagtattgtctgtactcagaaagacactgggactgtgttgagg 314
Query: 541 gacagagtgtccagaactgcagaaggggctgtggtgggtcagatgttacccacgagggct 600
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gacagagagtccagaactgcagaaggggctgtggtgggtcagatgttacccacgagggct 254
Query: 601 ggtccctcctcttgaatccccgccaagtgccctggcagtctctatactgccag 653
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggtctctcctcttgaatccccgccaagtgccctggcagtctctatactgccag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1051
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1041
Effective search space: 669363
Effective search space used: 669363
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no304_i10.g1 MSMg01no304_i10.g1 CHROMAT_FILE:
MSMg01no304_i10.g1 PHD_FILE: MSMg01no304_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:17 2005
(648 letters)
>mm_chr1_39596144_39597193
Length = 1050
Score = 1210 bits (626), Expect = 0.0
Identities = 644/651 (98%), Gaps = 4/651 (0%)
Strand = Plus / Plus
Query: 1 gaggacataaaggagattttaagaaaac--cctatcatcattatcttgtcgtcatcatca 58
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 201 gaggacataaaggagattttaagaaaacaacc-atcatcattatcttgtcgtcatcatca 259
Query: 59 tctgcatctgcatatttgacacctgcatcctcagcctaagtggctatgcttgcattaaaa 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tctgcatctgcatatttgacacctgcatcctcagcctaagtggctatgcttgcattaaaa 319
Query: 119 ctcagttcatgttcatgttttcctctttctgaaaaacagacttgtattggcatcatgctg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctcagttcatgttcatgttttcctctttctgaaaaacagacttgtattggcatcatgctg 379
Query: 179 atggtgtgtgtgttgggggggg-tcacgtgttctcggttgtcatttgagcgtggaactct 237
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 380 atggtgtgtgtgttgggggggggtcacgtgttctcggttgtcatttgagcgtggaactct 439
Query: 238 gatttttatagcattactgtttgaagtatgtcttatcacatgtccttgttaaaggtaccc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gatttttatagcattactgtttgaagtatgtcttatcacatgtccttgttaaaggtaccc 499
Query: 298 ttgtacttcattaaatgcatatatggtgtgtgcaaatgttagctcaccgacagtcatgtg 357
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttgtacttcattaaatgcatatagggtgtgtgcaaatgttagctcaccgacagtcatgtg 559
Query: 358 ttactctcattataggccactttcgaccagagtttatccgcccaccaccccctctccaca 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttactctcattataggccactttcgaccagagtttatccgcccaccaccccctctccaca 619
Query: 418 tctgtgaggatgaactggcctggctaaatcccacagaacccgagcatgccatccagtggg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctgtgaggatgaactggcctggctaaatcccacagaacccgagcatgccatccagtggg 679
Query: 478 acagatcgatgtgtgtgaagaatagcactggtgtggagatcaagcggatcatggcgaaag 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acagatcgatgtgtgtgaagaatagcactggtgtggagatcaagcggatcatggcgaaag 739
Query: 538 ccttcaaaagccccctgtcgtctccccaacagacacaggtatgtatgtatgtatgtatgt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ccttcaaaagccccctgtcgtctccccaacagacacaggtatgtatgtatgtatgtatgt 799
Query: 598 atgtttttattacagngtcccgtctgtgcctatcacagggtgttcttccca 648
||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 800 atgtttttattacagtgtcctgtctgtgcctatcacagggtgttcttccca 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1050
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1040
Effective search space: 663520
Effective search space used: 663520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
