BAC Information

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BAC

Clone NameMSMg01-304N05
Chromosome1 (Build37)
Map Location 126,146,953 - 126,147,687
singlet/doubletsinglet
Overlap genenone
Upstream geneDpp10
Downstream geneLOC666998
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304N05.T7 (MSMg01no304_n05.b1)MSMg01-304N05.TJ (MSMg01no304_n05.g1)
ACCAG429989AG429990
length1,3391,294
length of high quality
(start - end)
376 (421 - 796)735 (131 - 865)
definitionCHROMAT_FILE: MSMg01no304_n05.b1 PHD_FILE: MSMg01no304_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:59 2005CHROMAT_FILE: MSMg01no304_n05.g1 PHD_FILE: MSMg01no304_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCGCTCTTNNNNNNNCCATTGGGCGCTAAXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTAGTTATGGGAAGCCACATTTCAAGCCCCCCTGGG
GNTCATGGACTCTTCAGGGTACCTTAAAACTCCCAGGNNAGNGNGGAANC
CTTGGGGAAGNGCTTAACGAATAACTTTTGTTTTAGCTTGCAAATGCATA
TGTGGAAGTGTAAGTACATAATACACATACATATGTACCTGGAATTAAAT
ATGCATACTCATGCACAAAAACACATATACATGCTTACACATGCTCACAT
ACACACATGCTTACACACACACACACATTCACTAACATGTGATAATGTGC
ATATACACTAATGCACACATGTATACACACATGTACAATCACATGCACAT
AGGCATGCACACTTTTTTTTACTTATATGCATGCACACACATGCTGATGT
GGGTACACACATGCTCACACTCAGTCATATGCTACTGCACACACATACAT
ACACATGTACATTCACACATATGTGGATATGTATACATGCTCACCACACA
CATATGCACAAAGACATGCACATTTGCATATATACATACATAACAATACA
TACACTAACACATAAACATACACACATATGCAATTATGCATACATAAATA
CACTCAGATGCACATGTGATTACATATATATGATCACAAAACCTGCACAT
ACTCACACACACACAGACACACACATGCTCACACATAGGCACATAGAGAT
GCACACAAATGCACATGTAGATATACACACTCAAATACACATGTGCATAC
TCACTAACATGGACACACACATGCACATGCATGCACATGTGCACAAATAT
ATATGCTGGCAAGCATGCACCCACACATGCACATGTGCATACACAAAAAC
ACAGACAGGCACACGTACAAACATGTGCACTCATACACATGCATACACAT
TCACATGTGGATATATACATGTTCACACACTTTCATATACATCTGTTCCC
ACCCTGCGCACCTTCTTGTAGAAATGCCCACCCCCCACTTGGATATGTTC
TTTATCCCTTGGCCTCCCAAATTTGCCACAAACTCTGGACACCCTTTTTG
GGAAAAAGGAGGGAAAAAAATTTTCTTCCCCTTGCTTTTTAAAACCCCCA
AAAAACCACCCTATGTAAAAGGTTTTTTTTGTTTTATTCTCCGGGAAAGG
CCCCCCTTGGAAATGACCGTAAAAGCAAAAGGTCCACAATTTTTCAAAAA
GAAGAGACGGGGGATGGTATCTTTTTTTAAAAGGAAAAAAGGGGGGGTGT
GGTGGGGGTGGGGNNNCNCNNNANCNNCCCTTTCCTCNT
NNCCCTTTTTTTNNNNNAAGATGTGAGGCTGGGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAAATCTCCTCAAACC
TCAGNACTTCCTGTATTAATTCTTATTAGTTCCCAGATGCAATCATTTCA
TGGTTGTTCATTTTAATATGCATTGGTAGCTGGCTGACCTTCACAATTGG
TCATTATCATCTAGTGTGGGTGTAATATTGAGCACAATCTACCCATGGAT
GTCCTGCTTCTCCACTCTTAGTGGGAAGTCACAGTTTTGATGATGACCTT
GAGGGCTGCATCTTCTGCATCATAGTGACCTGTTTCTTCACTATCTTTTA
GACCCCTGCTCTTATCTCTGTCTCTCTGTTCTGCCTCACTGAACTGCTGA
GAGTGCCCACTTTTTATCATTTTCTCACTCTGGAGCCTCTGCATTTGTTC
TCTGATCTGCTTGGGTTGCTTCTTGCAGAAACCCAGGGCTATCATTCTTC
CATCCCTTCTCCCTTCAATCAAATGCTGCTTTCTTATGGAAATCTTCAGT
GTCCATCCCGTTTAGGACATTGTCACCACATCACTCCTCAAGGCTGGTCT
GATTCACCTTTTCTTACCCACTGCCCTCCACAGCACTGGCTCTTCTGAAT
CTAACCATCACTTTGGTTGTTTTATATCATTTCCATAAATGTAAATTCCA
TACGGTGAGGAAATGATGACCATTCACATAGAACTTCAAATAATTATCAA
ACAGCTCTTTAATAGGAAGAAATGGAAAAAGGAAAAAATATGAATATAGG
TCTAGTCATGAAATGAATTTTTTAATTTGTAATGGTTTATCAGATTTAAA
GTCACATTATTTTAATACAAACCTTATTGTGATTTCTTCACATCCAAGCC
TTTGTAGAACTGTTCCTAATAGAAAATTTTTGGAGTAACCTACATTGTCA
TCATTAGAAAAAGGATAAAAAAAACTGTGATATACACCCAAATAATTTAT
TCCCACTTAAGAAGGAGCCCTTATTGGTTTTTTATGAAATTAAGAACCGG
GAAACCCATTTAAACAATAAAAAATGGGCAAAATTTGTAAAATTCTTTTT
TCCGTAGAACCAAATTTTTGAAATATGTCCCCAATTTATAAAACCCGCGG
TTTTTGGGAACCCCCATTTCATTTATTATTTTTTTGTGCCAAAAAGCCCA
TAGTTTTTTTGAAAAAATTTCCACACCAAAAATTTTAGTTTCTTAAAAAA
AAACTTACATATATAGCTTATCTTAACAGCGAAATTCTCGGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_n05.g1 MSMg01no304_n05.g1 CHROMAT_FILE:
MSMg01no304_n05.g1 PHD_FILE: MSMg01no304_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:59 2005
         (735 letters)



>mm_chr1_126146753_126147887
          Length = 1135

 Score = 1367 bits (707), Expect = 0.0
 Identities = 728/739 (98%), Gaps = 8/739 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccagatgcaatcatttcatggttgttcattttaatatgcattggtagctggctgacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccagatgcaatcatttcatggttgttcattttaatatgcattggtagctggctgacct 260

                                                                       
Query: 61  tcacaattggtcattatcatctagtgtgggtgtaatattgagcacaatctacccatggat 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tcacaattggtcattatcatctagtgtgggtgtaatattaagcacaatctacccatggat 320

                                                                       
Query: 121 gtcctgcttctccactcttagtgggaagtcacagttttgatgatgaccttgagggctgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcctgcttctccactcttagtgggaagtcacagttttgatgatgaccttgagggctgca 380

                                                                       
Query: 181 tcttctgcatcatagtgacctgtttcttcactatcttttagacccctgctcttatctctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttctgcatcatagtgacctgtttcttcactatcttttagacccctgctcttatctctg 440

                                                                       
Query: 241 tctctctgttctgcctcactgaactgctgagagtgcccac----tttttatcattttctc 296
           ||||||||||||||||||||||||||||||||||||||||    |    |||||||||||
Sbjct: 441 tctctctgttctgcctcactgaactgctgagagtgcccacacact----atcattttctc 496

                                                                       
Query: 297 actctggagcctctgcatttgttctctgatctgcttgggttgcttcttgcagaaacccag 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 actctggagcctctgcatttgttctctgatctgcttgggttgcttcttgcagaaacccag 556

                                                                       
Query: 357 ggctatcattcttccatcccttctcccttcaatcaaatgctgctttcttatggaaatctt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggctatcattcttccatcccttctcccttcaatcaaatgctgctttcttatggaaatctt 616

                                                                       
Query: 417 cagtgtccatcccgtttaggacattgtcaccacatcactcctcaaggctggtctgattca 476
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cagtgttcatcccgtttaggacattgtcaccacatcactcctcaaggctggtctgattca 676

                                                                       
Query: 477 ccttttcttacccactgccctccacagcactggctcttctgaatctaaccatcactttgg 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ccttttcttacccactgccctccacagcactggctcttctgaatctaaccatcactttgg 736

                                                                       
Query: 537 ttgttttatatcatttccataaatgtaaattccatacggtgaggaaatgatgaccattca 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttgttttatatcatttccataaatgtaaattccatacggtgaggaaatgatgaccattca 796

                                                                       
Query: 597 catagaacttcaaataattatcaaacagctctttaataggaagaaatggaaaaaggaaaa 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 catagaacttcaaataattatcaaacagctctttaataggaagaaatggaaaaaggaaaa 856

                                                                       
Query: 657 aatatgaatataggtctagtcatgaaatgaattttttaatttgtaatggtttatcagatt 716
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 aataggaatataggtctagtcatgaaatgaattttttaatttgtaatggtttatcagatt 916

                              
Query: 717 taaagtcacattattttaa 735
           |||||||||||||||||||
Sbjct: 917 taaagtcacattattttaa 935


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 735
Length of database: 1135
Length adjustment: 10
Effective length of query: 725
Effective length of database: 1125
Effective search space:   815625
Effective search space used:   815625
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)