Query= MSMg01no304_o20.b1 MSMg01no304_o20.b1 CHROMAT_FILE:
MSMg01no304_o20.b1 PHD_FILE: MSMg01no304_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:13 2005
(749 letters)
>mm_chr1_58456028_58457176
Length = 1149
Score = 1386 bits (717), Expect = 0.0
Identities = 741/749 (98%)
Strand = Plus / Plus
Query: 1 ggttggggtagcacatgactataatcccattcataaattgagttaggagggtcatgaatt 60
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 201 ggttggggtagcacatgactataatcccattgaaaaattgagttaggagggtcatgaatt 260
Query: 61 caaggtcatcctaggttatatagtgtttactactgcaagcctagactactttagagcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaggtcatcctaggttatatagtgtttactactgcaagcctagactactttagagcctg 320
Query: 121 tttgagttgccaccccacccccacatactaagttagacatggtaattcacgcctgtaatt 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 tttgagttgccaccccacccccacatactaagctagacatggtaattcacgcctgtaatt 380
Query: 181 ccaacattcaggcgacagaggctagatgatttgaggtagacttgggctatttatggggag 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaacattcaggagacagaggctagatgatttgaggtagacttgggctatttatggggag 440
Query: 241 actatgtctaaaaataagatgaacaaaaataattttttcttgtgatcactgtattaagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actatgtctaaaaataagatgaacaaaaataattttttcttgtgatcactgtattaagaa 500
Query: 301 aaaaaatgaacatattgaagaaaaaaaatgaacatattgatccaggctggcctggaactt 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 aaaaaatgaacatattgaagaaaaaaaatgaacataatgatccaggctggcctggaactt 560
Query: 361 gctttgtagcccaccttaggcttgaactttagcaacccttaagcaattcccagtgctgta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctttgtagcccaccttaggcttgaactttagcaacccttaagcaattcccagtgctgta 620
Query: 421 tgctctgttgccatactccacttcatggttatattttaatacttgtaagcataagggaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgctctgttgccatactccacttcatggttatattttaatacttgtaagcataagggaag 680
Query: 481 aatttatgtatctaaccctgaaatttggtgtttgtgtctagttgtatagttgtatacaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatttatgtatctaaccctgaaatttggtgtttgtgtctagttgtatagttgtatacaaa 740
Query: 541 aaaaagtgtagttgtattttgtaatattcctgttttttgagcaatagttagcatatagtg 600
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 741 aaaaggtgtagttgtattttgtaatattcctgttttttgagcaatagctagcatatagtg 800
Query: 601 atagaagttactaaaaagtatagttttggtatgtgatgagattttacagtatagagtcca 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atggaagttactaaaaagtatagttttggtatgtgatgagattttacagtatagagtcca 860
Query: 661 ttttggctctaggaataactttaatcttcttctaggtttttaacaagctaatcaggcgct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ttttggctctaggaataactttaatcttcttctaggtttttaacaagctaatcaggcgct 920
Query: 721 acaaatacctggagaaaggttttgaagat 749
|||||||||||||||||||||||||||||
Sbjct: 921 acaaatacctggagaaaggttttgaagat 949
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 749
Length of database: 1149
Length adjustment: 10
Effective length of query: 739
Effective length of database: 1139
Effective search space: 841721
Effective search space used: 841721
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_o20.g1 MSMg01no304_o20.g1 CHROMAT_FILE:
MSMg01no304_o20.g1 PHD_FILE: MSMg01no304_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:13 2005
(705 letters)
>mm_chr1_58622096_58623201
Length = 1106
Score = 1210 bits (626), Expect = 0.0
Identities = 653/662 (98%), Gaps = 1/662 (0%)
Strand = Plus / Minus
Query: 1 tgaactctgccgcattcctgtgccacctcctcctttagaaaactgatcctaagacaggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tgaactctgccgcattcctgtgccacctcctcctttagaaaactgatcctaagacaggta 603
Query: 61 aaattatgaccttaacttaaaaaaaaaaagatgaagaatacatttcccatatgattaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aaattatgaccttaacttaaaaaaaaaaagatgaagaatacatttcccatatgattaaac 543
Query: 121 atgttaagaatttttggtagtctttggtaagtagctttatttattaagcagttttatctt 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 542 atgttaagaatttttggtagtctttggtaagtagctttatttattaaacagttttatctt 483
Query: 181 acgtgatcacctctttctgtctttgaattcagttttgaattattttagtagttacattta 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 482 acgtgatcacctctttctgtctttgaattcagttttgaattattttagtaattacattta 423
Query: 241 agaaatatgttatctgaattttactttgatttagttcatttattcagcatgattgtgata 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 422 agaaatatgttatctgaattttactttgatttatttcatttattcagcatgattgtgata 363
Query: 301 tcagggtccatctggataactgttggccaaagcaactttt-gtgactgacgactgtgttc 359
||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 362 tcagggtacatctggataactgttggccaaagcaaatttttgtgactgacgactgtgttc 303
Query: 360 tctttctgttataataatcacatgtagattctgattatttgagatatggcaaataaactg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tctttctgttataataatcacatgtagattctgattatttgagatatggcaaataaactg 243
Query: 420 ctctttctagtgtttattaataatgtacaaatatgcaaagtcaaagccaggtgttgtttt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctctttctagtgtttattaataatgtacaaatatgcaaagtcaaagccaggtgttgtttt 183
Query: 480 atgcctgtaatcctactacctaggaggtagagacaggatgatcaggagttcaattcaagg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 atgcctgtaatcctactacctaggaggtagagacaggatgatcaggagttcaattcaagg 123
Query: 540 tcatccttagcaagagggactagaagagaaaagagagcccaaataaatacttcttcccaa 599
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 122 tcatccttagcaagagggactagaagagaaaaaagagcccaaataaatacttcttcccaa 63
Query: 600 ttctatttcgctttaacgcaaggtcttgcgcacaccctgacaatcccactgttttcatag 659
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 62 ttctatttcgctttaacgcaaggtcttgcgcacaccccgacagtcccactgttttcatag 3
Query: 660 aa 661
||
Sbjct: 2 aa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1106
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1096
Effective search space: 761720
Effective search space used: 761720
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
