Query= MSMg01no305_a04.b1 MSMg01no305_a04.b1 CHROMAT_FILE:
MSMg01no305_a04.b1 PHD_FILE: MSMg01no305_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:24 2005
(366 letters)
>mm_chr1_7663666_7664431
Length = 766
Score = 636 bits (329), Expect = 0.0
Identities = 347/353 (98%), Gaps = 3/353 (0%)
Strand = Plus / Plus
Query: 16 gaattc-gggatggggatacctccagaagttttttttttaa-ttgtattgtggttctttt 73
|||||| |||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 215 gaattcagggatggggatacctccagaag-ttttttttaaaattgtattgtggttctttt 273
Query: 74 agctatcctaattatttttccatattaagttgagaattgctctgccaaggttcagcatca 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 agctatcctaattatttttccatattaagttgagaattgctctgccaaggttcagcatca 333
Query: 134 acaagaggagggttctgagaaaggtggggatggtagtagtacaaattaaataatgactca 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 acaagaggagggttctgagaaaggtggggatggtagtagtacaaattaaataatgactca 393
Query: 194 gagtcagtagttgatgcaagctgtccattcaagtactttttctttgcccaaggattccca 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gagtcagtagttgatgcaagctgtccattcaagtactttttctttgcccaaggattccca 453
Query: 254 ttattctttcttcctctcccttcttccttctcattcttcagtcttctctcatccttttga 313
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ttattctttcatcctctcccttcttccttctcattcttcagtcttctctcatccttttgg 513
Query: 314 ctcttctcttgtcatgcatttgactcctccttattcttttactttctcccaac 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ctcttctcttgtcatgcatttgactcctccttattcttttactttctcccaac 566
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space: 270249
Effective search space used: 270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no305_a04.g1 MSMg01no305_a04.g1 CHROMAT_FILE:
MSMg01no305_a04.g1 PHD_FILE: MSMg01no305_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:24 2005
(419 letters)
>mm_chr1_7860743_7861561
Length = 819
Score = 690 bits (357), Expect = 0.0
Identities = 380/389 (97%), Gaps = 4/389 (1%)
Strand = Plus / Minus
Query: 1 actttttggaaaagacaacacaccaaaatgcaggaataccaaggcagaaatgagaataga 60
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 508 actttttggaaaagacaacagatcaaaatgcaggaataccaaggcagaaatgagaataga 449
Query: 61 gcaaaataaaaataaataaattaaaaaaaaaa---caaacaaacgacaaaacttcattgg 117
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 448 gcaaaataaaaataaataaattaaaaaaaaaaaaccaaacaaacgacaaaacttcattgg 389
Query: 118 gtcaggctgtcatctcctacttctagaaaaagaatactgaaatggaagtttctggtagtg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gtcaggctgtcatctcctacttctagaaaaagaatactgaaatggaagtttctggtagtg 329
Query: 178 ttatgccatgcagactaatgtgatgttttgctgaagcaagacccatgaatagacatgtga 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttatgccatgcagactaatgtgatgttttgctgaagcaagacccatgaatagacatgtga 269
Query: 238 catttggaaagaatataaacaggattcaacagacaacatccaacagacagtgaaagcgca 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 catttggaaagaatataaacaggattcaacagacaacatccaacagacagtgaaagcgca 209
Query: 298 tttgcatacccagctttgcaacagttttgtggattcttcttcttcgttgatttt-cactt 356
||||||||||||||||||||||||||||||||||||| | ||||| |||||||| |||||
Sbjct: 208 tttgcatacccagctttgcaacagttttgtggattctgcatcttcattgatttttcactt 149
Query: 357 cattcagagaggtacagcagagaactgct 385
|||||||||||||||||||||||||||||
Sbjct: 148 cattcagagaggtacagcagagaactgct 120
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space: 332100
Effective search space used: 332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
